PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000264347

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 674aa MW: 76639.3 Da PI: 5.2941

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000264347	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	351.8	1.1e-107	306	672	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 + L++cA+av+s d ++a++lL+++ ++sp+gd +qRla+y++ +L+ rl + + y +lp s + ++ l+a++++ +++P++k+s+l a MDP0000264347 306 SMLTQCAQAVASYDRRNADELLKQIXLNSSPSGDGTQRLAHYLADGLELRLGS-GVPSYTSLPNSMS----AADLLKAYQTYIKACPFHKMSNLYA 396 689***********************************************9.4444445555544....69******************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N++Il+ +e+++r+HiiDf++ +G+QWp+L++ L++Rp+gpp+lRiTgv+ p++g +e++e+tg+rL++++++++v+fe+++ +a+++e++++e MDP0000264347 397 NKTILKLAEKATRLHIIDFGVLYGFQWPCLIKGLSKRPGGPPMLRITGVEFPQPGfrPSERVEQTGRRLENYCRRFNVQFEYTA-IANNWETIRYE 491 **************************************************9*************************.7****** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 +++++++E ++Vn+ ++l++l+de+v+ rd+vLkl+++++P+++++ + +n++ F +rf e+l ++s+lfd++e++lpre+++r +Ere MDP0000264347 492 DIKTDRDELTVVNCLYRLKNLPDETVTDCP-RDTVLKLIREINPDLFIHGVVNGTYNAPFFDTRFRETLFHFSSLFDMFEETLPREDQHRLLYERE 586 ******************99998887.************************************************************* PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + gr++ nv+aceg++r+er et+++W+ r ++aGF+++p ++++ k +++++++ + + + v+e+ ++++gWk+r + ++S W+ MDP0000264347 587 VYGRDAINVIACEGSRRVERPETYKQWQIRNKRAGFRQLPSDQEILKLVRSMVKRDYHKDFIVDEDGMWVLQGWKGRIVHAISYWK 672 ***************************************************99888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.897	278	652	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-105	306	672	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence Send to blast
MDTFLDEFPS PMNNFVFEQA PVPAYSNPNL VHEFEANHDF TDPSFFLVNP DPXSDLSSSP 60 GVSSEVDSPD SGDTSNEILR YISQMLMEEE EYLENKPCML HECLALQAAE KSLHDVLVQE 120 QNPFSTDPLL DSVYRYVESP NPGSNHSSSG SVASANWVGS DWDCVQDVSK FSPAQIPNPL 180 VSSGEGEIAH LEHNSSXVMA PRELQVKDVS NSPNGSRNKK NRQREDGDSV DDGRSNKLSA 240 VYADEVELPE LLDKVLLCEN DKQESNSCSP QESKKLQLNG KSRGSKGKKT RKKKPDDNAG 300 MVDLWSMLTQ CAQAVASYDR RNADELLKQI XLNSSPSGDG TQRLAHYLAD GLELRLGSGV 360 PSYTSLPNSM SAADLLKAYQ TYIKACPFHK MSNLYANKTI LKLAEKATRL HIIDFGVLYG 420 FQWPCLIKGL SKRPGGPPML RITGVEFPQP GFRPSERVEQ TGRRLENYCR RFNVQFEYTA 480 IANNWETIRY EDIKTDRDEL TVVNCLYRLK NLPDETVTDC PRDTVLKLIR EINPDLFIHG 540 VVNGTYNAPF FDTRFRETLF HFSSLFDMFE ETLPREDQHR LLYEREVYGR DAINVIACEG 600 SRRVERPETY KQWQIRNKRA GFRQLPSDQE ILKLVRSMVK RDYHKDFIVD EDGMWVLQGW 660 KGRIVHAISY WKPV

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence Send to blast

MDTFLDEFPS PMNNFVFEQA PVPAYSNPNL VHEFEANHDF TDPSFFLVNP DPXSDLSSSP  60
GVSSEVDSPD SGDTSNEILR YISQMLMEEE EYLENKPCML HECLALQAAE KSLHDVLVQE  120
QNPFSTDPLL DSVYRYVESP NPGSNHSSSG SVASANWVGS DWDCVQDVSK FSPAQIPNPL  180
VSSGEGEIAH LEHNSSXVMA PRELQVKDVS NSPNGSRNKK NRQREDGDSV DDGRSNKLSA  240
VYADEVELPE LLDKVLLCEN DKQESNSCSP QESKKLQLNG KSRGSKGKKT RKKKPDDNAG  300
MVDLWSMLTQ CAQAVASYDR RNADELLKQI XLNSSPSGDG TQRLAHYLAD GLELRLGSGV  360
PSYTSLPNSM SAADLLKAYQ TYIKACPFHK MSNLYANKTI LKLAEKATRL HIIDFGVLYG  420
FQWPCLIKGL SKRPGGPPML RITGVEFPQP GFRPSERVEQ TGRRLENYCR RFNVQFEYTA  480
IANNWETIRY EDIKTDRDEL TVVNCLYRLK NLPDETVTDC PRDTVLKLIR EINPDLFIHG  540
VVNGTYNAPF FDTRFRETLF HFSSLFDMFE ETLPREDQHR LLYEREVYGR DAINVIACEG  600
SRRVERPETY KQWQIRNKRA GFRQLPSDQE ILKLVRSMVK RDYHKDFIVD EDGMWVLQGW  660
KGRIVHAISY WKPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-42	308	672	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028944190.1	0.0	scarecrow-like protein 11
TrEMBL	M5W391	0.0	M5W391_PRUPE; Uncharacterized protein
STRING	XP_008384941.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-167	GRAS family protein

Link Out ? help Back to Top
Phytozome	MDP0000264347