PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000263056
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 546aa    MW: 61602.3 Da    PI: 7.2464
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000263056genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1063e-331352262102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+ye+++d+ +++++sws++++sf+v+++ efa+++Lpk+Fkh+nf+SF+RQLn+YgF+k++ e+         weF ++ F +g+ + ++ki
  MDP0000263056 135 FLSKTYEMVDDALTDSIVSWSASNKSFIVWNPPEFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFXNDDFIRGQPHIMKKI 221
                    9********************999****************************************9998.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  MDP0000263056 222 RRRKP 226
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-36125219IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-33130224IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-59131224IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-29135224IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-19135158IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-19173185IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340174198IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-19186198IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MGCEAQLPSV TCFTHNTQGL QPLFNRGGPH PSGCVPPFRF RKLFQRAAKR LVKNAILFRI  60
LQLNKSELKT YLRDLILVNC WILVSVSSGL TELRLLSFRD GVVDLVQGFD LGCGELNQLI  120
RMEEVQGGTS SLPPFLSKTY EMVDDALTDS IVSWSASNKS FIVWNPPEFA RDLLPKFFKH  180
NNFSSFIRQL NTYGFRKIDP EQWEFXNDDF IRGQPHIMKK IRRRKPVHSH SLQNLQVQGQ  240
GTSLSEAERQ SMKDEIERLK HEKERLGVEV QRHEQERHXL ELQMQFLMDR LQHMEKQQQS  300
MAAFVARVLH KPGIASNPVP QLEVRERKRR LPRISWSFDD AXSGYNQMVT SQAVIRENGG  360
TEKLEQLESF LTFWEDTIHD VGHNNVQVGS TSNREADEST SGNESTALSS IQLNADIRSK  420
SPGIDMNAEP PASVAPKPAA SQSSKEQTAG IAASAPTTAL TQQTSKEKXA GTTASAPTGV  480
NDIFWEQFLT ENPGTSXAQE VLIERKDSDG KTNDSKPGDH GMLWWNMRNV NNLTEQMGHL  540
TPVEKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2312822422129Heat shock factor protein 1
5d5v_B2e-2312822422129Heat shock factor protein 1
5d5v_D2e-2312822422129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325330ERKRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.162920.0bud| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR1321920.0KR132192.1 Eriobotrya japonica heat shock factor 1 (HSF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028966132.10.0heat stress transcription factor A-4c-like
SwissprotO494031e-120HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A498ISU30.0A0A498ISU3_MALDO; Uncharacterized protein
STRINGXP_008383593.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-120heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]