PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000262289

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 935aa MW: 102041 Da PI: 8.0736

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000262289	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.2	4.5e-09	255	302	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r++W++ Ed+ l+ avk++G g+W r g Rt+ q+ rw k MDP0000262289 255 RKNWSEAEDLELIAAVKKYGEGNWXNMLR--GdfkGDRTPSQLAQRWKKI 302 789*********************665..234579********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.468	250	307	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-12	251	302	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.81E-11	251	303	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-9	254	305	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-7	255	302	IPR001005	SANT/Myb domain
CDD	cd11660	9.89E-11	256	300	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 935 aa Download sequence Send to blast
MVEKTKEPKK GSITEEDTAT LLQRYAPTTV LALLQEVANS PKGKIDWNRL VAKTSTGISN 60 AREYQMLWRH LAYREALLDK LDNGAQPLLR CTLCFPELLF VDMVRNGEMG NFHGNVFKLY 120 ELINKFLAED DDSDLEYEVE AYPAVSAEAS TEAVACVKFL CEAGLISAVL ISSGLSSDSS 180 HQNGLTVEGL LSMNLPNQSS RSQQNLQPTC SMQGKNITVP VSVLKNSLPA VTTTTVETXE 240 GDDALGNGMA PRKRRKNWSE AEDLELIAAV KKYGEGNWXN MLRGDFKGDR TPSQLAQRWK 300 KIRGNNDLNV GGRSKLSEAQ LAARHSLSIA LNMPNITANT IGTAGTSTHS MLAGTNATSN 360 SLHFTTAEAK PLSQKGLDPV KAEAKPQSQE GLNPAKTYQM GLSGSTTKAP VIAKKTISKL 420 TDSKVRATAV AAGARIAFPS DAASLLKAAQ AKNAVHIMPT VCSSTQSVKP GGMSTHSELP 480 PNVHILRSSS VATPLSTPSS TAATPSTTRP RSSKVLPQAS QHTPTKDAML SRQTNGVSCN 540 LDAEQVQDGA VIFRDGPNDQ VQKDKXDSPD QKAESKNLST NAEKPVDTPK IESDETGSKA 600 VTGVQAKEGK SAKDNEIPRS SVNVGASDPS AVDGCENRSA SEKQTDLAIE TDGCKGKQVV 660 YMKRPVKLAC GKIETGTQPP NTMILTRIAK IPPVEEIESS PRHKLPKSNE FVATPNSEKQ 720 RNLLSXMMKT TKKMKNVGLL SIFLLDFKVE PQISLRKTKK LSFRQSSSPX PAHPPKNDVR 780 TDDDIVQVSN ELFDHDDNLA AESFAFXRDI DVNQSPRLDV DVDVDVDEDE YFEFPILINN 840 PTSNPTDDPF QKEYSSGGDQ HSTDNHSFIQ TILGQHLLKS LSFRHRSIPQ RHTFPETEKN 900 FAQRRIIKMK EKKSMDKPDC FLILRYLLGT IPIVV

Sequence ? help Back to Top

Protein Sequence Length: 935 aa Download sequence Send to blast

MVEKTKEPKK GSITEEDTAT LLQRYAPTTV LALLQEVANS PKGKIDWNRL VAKTSTGISN  60
AREYQMLWRH LAYREALLDK LDNGAQPLLR CTLCFPELLF VDMVRNGEMG NFHGNVFKLY  120
ELINKFLAED DDSDLEYEVE AYPAVSAEAS TEAVACVKFL CEAGLISAVL ISSGLSSDSS  180
HQNGLTVEGL LSMNLPNQSS RSQQNLQPTC SMQGKNITVP VSVLKNSLPA VTTTTVETXE  240
GDDALGNGMA PRKRRKNWSE AEDLELIAAV KKYGEGNWXN MLRGDFKGDR TPSQLAQRWK  300
KIRGNNDLNV GGRSKLSEAQ LAARHSLSIA LNMPNITANT IGTAGTSTHS MLAGTNATSN  360
SLHFTTAEAK PLSQKGLDPV KAEAKPQSQE GLNPAKTYQM GLSGSTTKAP VIAKKTISKL  420
TDSKVRATAV AAGARIAFPS DAASLLKAAQ AKNAVHIMPT VCSSTQSVKP GGMSTHSELP  480
PNVHILRSSS VATPLSTPSS TAATPSTTRP RSSKVLPQAS QHTPTKDAML SRQTNGVSCN  540
LDAEQVQDGA VIFRDGPNDQ VQKDKXDSPD QKAESKNLST NAEKPVDTPK IESDETGSKA  600
VTGVQAKEGK SAKDNEIPRS SVNVGASDPS AVDGCENRSA SEKQTDLAIE TDGCKGKQVV  660
YMKRPVKLAC GKIETGTQPP NTMILTRIAK IPPVEEIESS PRHKLPKSNE FVATPNSEKQ  720
RNLLSXMMKT TKKMKNVGLL SIFLLDFKVE PQISLRKTKK LSFRQSSSPX PAHPPKNDVR  780
TDDDIVQVSN ELFDHDDNLA AESFAFXRDI DVNQSPRLDV DVDVDVDEDE YFEFPILINN  840
PTSNPTDDPF QKEYSSGGDQ HSTDNHSFIQ TILGQHLLKS LSFRHRSIPQ RHTFPETEKN  900
FAQRRIIKMK EKKSMDKPDC FLILRYLLGT IPIVV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008378592.2	0.0	uncharacterized protein LOC103441673 isoform X1
TrEMBL	A0A498JAA2	0.0	A0A498JAA2_MALDO; Uncharacterized protein
STRING	XP_008378593.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3122	32	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	2e-49	MYB_related family protein

Link Out ? help Back to Top
Phytozome	MDP0000262289