PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000260377
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 345aa    MW: 38916 Da    PI: 8.7186
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000260377genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.9e-36741642101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d++++++isws++g+sfvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF ++sF++g+k+ll++i
  MDP0000260377  74 FLTKTYQLVDDPSIDDVISWSDDGSSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFLNDSFRRGEKRLLCEI 160
                    9*****************************************************************99.........******************* PP

                    XXXX CS
   HSF_DNA-bind  98 krkk 101
                    +r+k
  MDP0000260377 161 QRRK 164
                    **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.2E-3864158IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5870163IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.95E-3571163IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.9E-217497IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-3274163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-21112124IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340113137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-21125137IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MPLISKWTAK RQFSHKLIPS LPTAHKPPRP RNRRKSDPEV SRNGAAFDMA PTPVEPTGES  60
TSSESSQRAL PTPFLTKTYQ LVDDPSIDDV ISWSDDGSSF VVWNPTVFAR DLLPKYFKHN  120
NFSSFVRQLN TYGFRKVVPD RWEFLNDSFR RGEKRLLCEI QRRKINPPAP PVASVWAVPT  180
AKPIISPANS GDEQVISSSS SPIRASSEIM DENERLRKEN MQLTKELVEL KSLCNNIFTM  240
VSNYACAQSE SGFPELKPLD LMPGKRFPGK REHEEEEEAS PKLFGVAIGA KRAREARGDG  300
VENDETNLRL QQPSASEVKS EPSDIGHKET PWLKQCHMAN QRVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-247416329129Heat shock factor protein 1
5d5v_B3e-247416329129Heat shock factor protein 1
5d5v_D3e-247416329129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376546.10.0heat stress transcription factor B-2a-like
SwissprotQ9SCW41e-92HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A498JN670.0A0A498JN67_MALDO; Uncharacterized protein
STRINGXP_008376546.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-88heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]