PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000259786
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 703aa    MW: 79037.7 Da    PI: 7.0237
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000259786genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.99.2e-3264119359
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     vrY+eClkNhA+++Ggha+DGCgEf+++ g+egt++alkCaAC+CHRnFHR+e+e 
  MDP0000259786  64 MVRYRECLKNHAVTIGGHALDGCGEFLSA-GDEGTIDALKCAACNCHRNFHRKESEG 119
                    79**************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-2865117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.6E-2966116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2266118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.04967116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.48E-20191264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-31194264IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-26205261IPR006455Homeodomain, ZF-HD class
PROSITE profilePS502979.012269349IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.0E-15270396IPR020683Ankyrin repeat-containing domain
CDDcd002041.24E-11271391No hitNo description
SuperFamilySSF484031.71E-15273430IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-15523611IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.0E-15532610IPR020683Ankyrin repeat-containing domain
PfamPF139628.0E-9627666IPR026961PGG domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MEFDEHEEQD EEMEMQAAPP GYASVAESSR PKMGPAGEET VSSARKRGTA AAPNSTTTTT  60
LATMVRYREC LKNHAVTIGG HALDGCGEFL SAGDEGTIDA LKCAACNCHR NFHRKESEGE  120
LIXHHQGAGG AXHHHHQHQF SSXYCRPPPP PSGYLITSPH ARPTLALPAA SIGGRGGSHS  180
REEGEDVSNP SSSGGGGGGG FGMSKKRHRT KFTQEQKEKM LEFAEKVGWR IQKHDEAAIE  240
EFCGETGVKR HVFKVWMHNN KHTLDEIPHE YHAFFAAVRR GDWQETEKFL NQHPNAKTAT  300
DSWGTALHNA TICGHEKIVE ELVQLMTKED LERKASGGWT ALGYAARDNL KMVECMVTRN  360
RELLSIAVES WQRIPIVIAA RYDQWDIVRY LYPFTPREDL MPDKGPYGSE LVSFCLFAEQ  420
FDIAWELLQR SPRLACTRGN NICPIFAFAH VPYAFPSGTS LKXWQRXIYN CIHIEHVPSV  480
NDFRINIQNQ ENEQGNQRXR TGINRIRELK LIHVWSRQIV GCMCEVIKQL NHEEMRDGDV  540
YDAIFAAVEN GIVELVISLC KAKPELLWTC NTSGKYLFQY SVECRQEKEV ESIVVQLSGV  600
PTKNKDGLTP PKLFTQSHKK LHEDGERWMK ETARSYTVVS ALIITIMFAA AFTVPGGDNQ  660
ETGFSHILKR KPIYGFXNFR CNFAIFFGNI SVNVFGHPYI ALC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-242042631675ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-53homeobox protein 22