PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000259453

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 395aa MW: 43949.9 Da PI: 6.1933

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000259453	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	83.2	4.4e-26	218	381	2	168
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshl 96 + Ll++Ae v +++e+a++lL + + as + + +qR ++yfteAL++r+ + +++++yk ++s+ s + ++ + + P++ + l MDP0000259453 218 AHILLAAAEKVGYQQFERANRLLLHCEVDASFKVNGVQRFVFYFTEALSERIKKeTGNSMYKGNQMSTYS--LGLGTSLSFLACCQDIPFIPVMKL 311 699*************************************************7777888777666665..3344444444566778**** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakf 168 a q Il v+ e++v iD++i G+QW L++ La+R+ l iT+vg +sk+++eetg+rLa+ MDP0000259453 312 PAIQVILVNVALESKVLLIDLEIRSGVQWTGLMEVLAEREeCHIELLTITAVGV---TSKQKIEETGRRLART 381 ************************************4445699***...68*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	16.053	191	395	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-23	218	381	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MANAFFSFTP FDFGVLGGGG GLTPQLEDYE KEDREFKGKP DHLFGIQELG LGEREKLSHL 60 SKDQQQSKAS YLMMDNFSFD TVCSKHDLQR SNSKSEKGRV HDAGNQLMYS QIGGSDIAET 120 NKQLPHQSSL AALDLLNNYG SAFKKLRGDR LSNRCTEVEA SSYSIQQKLS TEEIMRVAGA 180 RYVQISNQGY GDFLMPLHPF GYALSGLSEE ETKDVELAHI LLAAAEKVGY QQFERANRLL 240 LHCEVDASFK VNGVQRFVFY FTEALSERIK KETGNSMYKG NQMSTYSLGL GTSLSFLACC 300 QDIPFIPVMK LPAIQVILVN VALESKVLLI DLEIRSGVQW TGLMEVLAER EECHIELLTI 360 TAVGVTSKQK IEETGRRLAR TSDCGRHGRC QGPVV

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MANAFFSFTP FDFGVLGGGG GLTPQLEDYE KEDREFKGKP DHLFGIQELG LGEREKLSHL  60
SKDQQQSKAS YLMMDNFSFD TVCSKHDLQR SNSKSEKGRV HDAGNQLMYS QIGGSDIAET  120
NKQLPHQSSL AALDLLNNYG SAFKKLRGDR LSNRCTEVEA SSYSIQQKLS TEEIMRVAGA  180
RYVQISNQGY GDFLMPLHPF GYALSGLSEE ETKDVELAHI LLAAAEKVGY QQFERANRLL  240
LHCEVDASFK VNGVQRFVFY FTEALSERIK KETGNSMYKG NQMSTYSLGL GTSLSFLACC  300
QDIPFIPVMK LPAIQVILVN VALESKVLLI DLEIRSGVQW TGLMEVLAER EECHIELLTI  360
TAVGVTSKQK IEETGRRLAR TSDCGRHGRC QGPVV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008386716.2	0.0	DELLA protein RGL1-like
TrEMBL	A0A498IMH3	0.0	A0A498IMH3_MALDO; Histone-lysine N-methyltransferase
STRING	XP_008369106.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	9e-11	RGA-like 1

Link Out ? help Back to Top
Phytozome	MDP0000259453