PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000259085 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 387aa MW: 42985.8 Da PI: 8.9716 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.8e-19 | 229 | 278 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ g+W+AeIrdp+ + +r++lg+f+tae Aa a+++a++k++g MDP0000259085 229 HYRGVRRRP-XGKWAAEIRDPV----KaARVWLGTFDTAEAAALAYDKAALKFKG 278 69*******.8*********64....55************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.66E-22 | 228 | 287 | No hit | No description |
PROSITE profile | PS51032 | 24.395 | 229 | 286 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-21 | 229 | 287 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-31 | 229 | 287 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-12 | 229 | 278 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-34 | 229 | 292 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 230 | 241 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 252 | 268 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MGLAKTIFAL LFPLGAWSLP LRPSHRLLLP YSYLLLLPHS LHRDKERKRE EGQKEEPFLE 60 SVVAKWYERV VGNFNGVENI SEKQGQDSDE ALQGLGGSIL QGVEHAGLEE GQGRHPLRLH 120 SLGHHHRHEL RTQAVHKVDR KHGKRLLASV ESEEKEEDQI FPVYSTRSQQ DTSAMVSALA 180 QVIGKNSDQI NNPLDQVQGI NPLITSQSSP TETQSQTVLQ DQGNLRRQHY RGVRRRPXGK 240 WAAEIRDPVK AARVWLGTFD TAEAAALAYD KAALKFKGSK AKLNFPERVQ GISESGCLAL 300 ITTDQQDSLN INPPQPNITR PTSSSVFDCT QYNNVTSSTS LLSSSSMPSQ QAAELPSFSM 360 QFGSSFSSSS SGPPHKYRKD FDSSHSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-24 | 228 | 289 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028960109.1 | 1e-148 | ethylene-responsive transcription factor ERF114-like | ||||
TrEMBL | A0A498JJ36 | 0.0 | A0A498JJ36_MALDO; Uncharacterized protein | ||||
STRING | XP_008375518.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF985 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07310.1 | 8e-35 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000259085 |