PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000258984 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 378aa MW: 42343 Da PI: 8.8095 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.4 | 3.9e-06 | 72 | 96 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt lCr f+ G C+ G rC+FaHg MDP0000258984 72 YKTQLCRKFQM-GCCSSGQRCSFAHG 96 9**********.*************9 PP | |||||||
2 | zf-CCCH | 27.3 | 6.4e-09 | 132 | 155 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++Cr f+r GtC+yGd+C+F H+ MDP0000258984 132 VRICRSFFRWGTCSYGDKCRFRHV 155 799******************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.03E-7 | 69 | 101 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-13 | 69 | 101 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0034 | 71 | 97 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.54 | 71 | 98 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-4 | 129 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.723 | 129 | 157 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-6 | 131 | 155 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 132 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-7 | 133 | 155 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MGTPLPTPQF FAQYLESGDS RRQRKHQIPT EEKEIKAQSD INSQAFKKPR TSETVSNSNA 60 ASGQNKMLPS YYKTQLCRKF QMGCCSSGQR CSFAHGTSDL RRTLRDAQGM ETEKGNLARR 120 TWNGDHGSSN GVRICRSFFR WGTCSYGDKC RFRHVNPENI RDSSFISIST AGGSAQFDCK 180 KSLEQRKLCG YTTPECGSVQ ANSLTAYTRG NNASNHRMGI AIAYKQGQST QCNLEWNELE 240 KLSRIYADWI EDMPLLHGSS SKVECYSSLI TSENSPLAIC VLGSHTCASV CMHEFAIFSQ 300 TKTVATQQGL KPLSCLGPRW PLMDIFGFRF STRERACKDP RMSMMTNHVC FLGLQFVQDA 360 EILGEKCPAL KKLPLKED |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028953352.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like | ||||
TrEMBL | A0A498HJ71 | 1e-176 | A0A498HJ71_MALDO; Uncharacterized protein | ||||
STRING | XP_009349123.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15275 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 6e-16 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000258984 |