PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000258417
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 494aa    MW: 55376.8 Da    PI: 8.968
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000258417genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.56.7e-20121211199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f+k l++s+v +  ++ lp  f+++h  +  +++t+tledesgr++++k+i +k++    l++GW++F+ +++L egD++vF+l++ ++f  +v +
  MDP0000258417 121 FVKSLVRSHVASCFWMGLPSLFCKSHLPD--KDITMTLEDESGRQYQLKYIACKTG----LSAGWRQFAASHNLLEGDVLVFQLVELTKF--KVYI 208
                    89************************644..678****************777776....***********************9876777..8888 PP

                    E-S CS
             B3  97 frk 99 
                    +r+
  MDP0000258417 209 IRS 211
                    875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-21113212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-23116213IPR015300DNA-binding pseudobarrel domain
CDDcd100175.20E-28119210No hitNo description
SMARTSM010194.2E-23121212IPR003340B3 DNA binding domain
PfamPF023623.3E-17121211IPR003340B3 DNA binding domain
PROSITE profilePS5086313.563121212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MARKVDGKPQ TPPSKPRLRP KPAANPKPSS LPTAKVKKPG KPNEKEVEHS MPMKELSNTQ  60
ITKFPHKHIV ALIDQKVDXS SGNTQYEFPV DGSPSRGQAK SSAVIRAQEV RSKLERQFPS  120
FVKSLVRSHV ASCFWMGLPS LFCKSHLPDK DITMTLEDES GRQYQLKYIA CKTGLSAGWR  180
QFAASHNLLE GDVLVFQLVE LTKFKVYIIR SNGMAEVDGA LGLXNLDNNT KQKDSGKFIN  240
LSVXFFLVSY KDNAETSTTP CNDSIRKRAH SPQLVVPKKK KIGLQRAEQS ENDSEXAGSE  300
VSEDLKSPAA ALQFEDIRSY ENFHILVDGL FLDXEFPEDV RKKYYKLCRS QKAFLHENVI  360
KGMNPNLIIG AISETVNIAD SIKACKVTTX RDDFVSWDKY LTAFELLGMN VGFLRDRICR  420
LANLADDSGA ALEAKMYKEA RIERSQAGIG IRNIEVKLEE MREACDEFGA AIESLRSKAE  480
INTLKFQEEV TAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265280RKRAHSPQLVVPKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.153520.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339962.20.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A498KFP00.0A0A498KFP0_MALDO; Uncharacterized protein
STRINGXP_008339962.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-36B3 family protein