PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000257646
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 1365aa    MW: 157775 Da    PI: 7.1109
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000257646genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.41.8e-2160143189
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                    ++Yn YAkevGF+vr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a+l++++ ++++w++ ++ leHnH l
  MDP0000257646  60 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMLRMRLVDSKRWRILEVTLEHNHLL 143
                    69*****************************************9988.....99*********************************87 PP
2FAR169.48.5e-22757839290
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+v+++eleHnH ++
  MDP0000257646 757 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDSNRWRVIEIELEHNHLIS 839
                    9***************99997.66779**************99888.....***********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1860143IPR004330FAR1 DNA binding domain
PfamPF105512.2E-33262356IPR018289MULE transposase domain
PROSITE profilePS509669.99549585IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-4551582IPR007527Zinc finger, SWIM-type
SMARTSM005757.5E-7560587IPR006564Zinc finger, PMZ-type
PfamPF031016.5E-19757839IPR004330FAR1 DNA binding domain
PfamPF105511.7E-269601054IPR018289MULE transposase domain
PROSITE profilePS509669.35912471283IPR007527Zinc finger, SWIM-type
PfamPF044346.5E-412561280IPR007527Zinc finger, SWIM-type
SMARTSM005756.7E-612581285IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1365 aa     Download sequence    Send to blast
MEVASLDSEQ VPDGECNEII TDGDGVLTES DVQNGVIEGR KEFVSPAVGM EFESYDDAYN  60
YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAML  120
RMRLVDSKRW RILEVTLEHN HLLGAKMYKS INKMGSGTKR KSQSSSDAEK RTIKLYRALV  180
IDSGGNGTSN SSIADIRTFS DHPDQLNLKK GDTQAIYNYL CRMQLTNPNF FYLMDFNDDG  240
LLRNVFWIDA RCRAACGYFG DVIYFDNTYL SNKYDIPLVA FVGINHHGQA VLLGCALLAG  300
ETTESYTWLF KAWLTCVSGH SPQTIITDRC KALQSAIAEV FPRSHHRFGL SHIMKKIPEK  360
LGGLRNYDAI RKALTKAVYE TLKVIEFEAA WRFMIQRFGV GDHEWLRSLY EERFWWAPVY  420
LKETFFAGMV AARPGEALSP FFDRYVHKQT PLKEFLDKYE LALQKKHKDE ALADIESRSA  480
SPTLKTRCSF ELQLSKVYTR EIFEKFQFEV EEMYSCLSTT QLHVDGPIII FLVKERVVVE  540
GNRREIRDYE VLYNRTAGEV RCICSCFNFY GYLCRHALCV LNYNGVEEIP SKYILSRWKK  600
DYKRLYIPDQ GSSNVDATDR VQWFNQLYRS ALHIVEEERS EKKYGCLSPK AAQRKRFRNN  660
RSLEDEDLKK LNKFSWEVGT ESRVRYQLVS WFRIGWKMDE VSLNTEPAGQ DDADEFEIEG  720
DCAMTDFISQ TGIIQGENPL PPVVGMEFDS YEDVYYFYNC YAKQQGFGVR VSNTWYRKSK  780
ERYRGKLSCS SAGFKKKSEA NRPRPETRTG CPAMIKFRLM DSNRWRVIEI ELEHNHLISP  840
ASVKFYKSHK AIGVGTKRAL QMDTSEDVQK IRLFRTVIVD SEGNGSMDGD EGESGNRVDY  900
SSQLKLKEGD AQAVQNHFSR LQLVDPNFFY VVDLNEKGCL RNLFWADART RVAYGYFNDV  960
VSIDTKCVEN KFEVPLVSFI GVNHHGQSVL LGCGLIASET VESYTWLFRA WLTCMMGRPP  1020
QAIITRQCGT LQTAISDVFP RASHCLCLSH IMQKVPEIFG GLFEYEAVKE SLSRAVYYSL  1080
RVEEFEAAWE DMVQHHGIRD HNWLQALYED RKRWVPVYLR DIFLAGMFPV QPSEVVSSFF  1140
EEFLDRDTPL KEFLDKYDRA LQTHHHLEAS ADLDSRNSSY TLESRCYFEL QLSKLYTNDI  1200
LRKFEKEVEG MYSCFSTSQL NVDGPVITYV VKEQTESGGN RRETRDYEVL YNQSEMEVLC  1260
ICGMFNLRGY LCRHALSVLN QNGVEEIPAQ CVLSRWRKDI KRSYIFDHSC SGIDINNPVH  1320
RYDHLYKCIV QVVEEGRKSE DRYKLALGAL DEILKKLCLT EDPAL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.257870.0fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336308.20.0PREDICTED: uncharacterized protein LOC103928916
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A371GLZ60.0A0A371GLZ6_MUCPR; Protein FAR1-RELATED SEQUENCE 6 (Fragment)
STRINGXP_004486559.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]