PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000256730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 140aa MW: 15808.2 Da PI: 4.1476 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38 | 4.8e-12 | 9 | 41 | 1 | 34 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevi 34 l+pGfrFhPtdeelv++yLk+kv+gk++++ + i MDP0000256730 9 LAPGFRFHPTDEELVWYYLKRKVSGKNFRF-DPI 41 579************************887.444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-12 | 6 | 50 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-9 | 11 | 54 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 140 aa Download sequence Send to blast |
MARGKENSLA PGFRFHPTDE ELVWYYLKRK VSGKNFRFDP ISKDPYVLCR IFQKSGTGPK 60 NGEKYGAPVM EEEWDDDDVT CVXGEEAAAN VVAVSEEPDN EANDFNNGAY VEAFDLDQIW 120 PEFIEFKDNS PSCGKPPDVL |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.3857 | 2e-91 | bud| cell culture| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008339778.2 | 1e-43 | NAC domain-containing protein 53-like | ||||
TrEMBL | A0A498JIA9 | 4e-42 | A0A498JIA9_MALDO; Uncharacterized protein | ||||
STRING | XP_008339778.1 | 4e-43 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04410.1 | 3e-17 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000256730 |