PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000256486
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 604aa    MW: 66498 Da    PI: 4.9391
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000256486genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.91.6e-1092356042374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++Ll+cA+ ++++d   a + L rl+e  s +gdp+qR+a+yf+eAL++r++     l +  + ++++++  ++ + ++k++++++P+ kf+hlt
  MDP0000256486 235 LKALLDCAR-LAESDPDGAVKSLVRLRESISDHGDPTQRVAFYFAEALQNRVSF----LQSEKSFTTAHDTPCEDFTLSYKALNDACPYSKFAHLT 325
                    689******.5666999***********************************98....44444455555555999********************* PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    aNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p s+Ri g+ +p+ g   + +l +tg+rL++fA  l+++fef++ + + +++l+
  MDP0000256486 326 ANQAILEATERATKLHIVDFGIVQGVQWAALLQALATRSTGKPvSIRISGIPAPSLGdsPAASLIATGNRLREFAXLLELNFEFEP-ILTPVHQLD 420
                    ***************************************77777**********999889999***********************.799****** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     +  rv+p+EalaVnlvlql++llde+ +  +   + Lkl ksl+P++v++ e ea++n+  F+ rf +al+yy+alf+sle ++ r+s er kvE
  MDP0000256486 421 ESCVRVDPDEALAVNLVLQLYNLLDEKPTAVQ---SALKLAKSLNPQIVTLGEYEANLNRVGFASRFKNALKYYAALFESLEPNMIRDSPERLKVE 513
                    ************************99999988...9************************************************************ PP

           GRAS 287 rellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                    r llgr+i ++v  e+   +rer e +e+W+  +e +GF+pv+ls + ++qak ll +++ s  y++ e+   ++ l W++ pL++vS+Wr
  MDP0000256486 514 RLLLGRRIGSLVGPEQPGtKRERFEDKEQWKYLMECSGFEPVALSXYSVSQAKILLWNYNySSLYSLSESPPGFLsLSWNEVPLFTVSSWR 604
                    **************998769****************************************9999****99877777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.883208582IPR005202Transcription factor GRAS
PfamPF035145.4E-107235604IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QKQQQEQQQQ QRHHHHQPPL GAFSLTPWPN NNHHTPTQSP  60
NLGFGLTGSG FSDPFQLPGS SDAGGEPGFP FPNLDHHSAG FRFSDLGGGG PAEFDSDEWM  120
DSIIGGGDST DSSNLPSACD TWQGSNSDFG LYGADPFRPH CPSRLSNPCS PPSDLNRVIF  180
SETQNQLPAW TSPLPQQLHQ VSVKESKSTD PQSLQNDAVG VSLRSPEIES EPPLLKALLD  240
CARLAESDPD GAVKSLVRLR ESISDHGDPT QRVAFYFAEA LQNRVSFLQS EKSFTTAHDT  300
PCEDFTLSYK ALNDACPYSK FAHLTANQAI LEATERATKL HIVDFGIVQG VQWAALLQAL  360
ATRSTGKPVS IRISGIPAPS LGDSPAASLI ATGNRLREFA XLLELNFEFE PILTPVHQLD  420
ESCVRVDPDE ALAVNLVLQL YNLLDEKPTA VQSALKLAKS LNPQIVTLGE YEANLNRVGF  480
ASRFKNALKY YAALFESLEP NMIRDSPERL KVERLLLGRR IGSLVGPEQP GTKRERFEDK  540
EQWKYLMECS GFEPVALSXY SVSQAKILLW NYNYSSLYSL SESPPGFLSL SWNEVPLFTV  600
SSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1472336043375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.13520.0bud| fruit| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338470.20.0SCARECROW-LIKE protein 7
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLM5VW270.0M5VW27_PRUPE; Uncharacterized protein
STRINGXP_008338470.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein