PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000254227
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 1058aa    MW: 116785 Da    PI: 8.572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000254227genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-209911040255
            AP2    2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55  
                     +y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+ +++g
  MDP0000254227  991 KYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFETAEEAARAYDKAAVEFRG 1040
                     8********.**********82....48***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.6456397IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.7129163IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.536164194IPR002885Pentatricopeptide repeat
PfamPF130412.8E-7194240IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.348195229IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.601230264IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.9E-5294327IPR011990Tetratricopeptide-like helical domain
PfamPF130413.1E-7295341IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.194296330IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.9E-5364414IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.281366396IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.301397431IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.8E-7401433IPR002885Pentatricopeptide repeat
PfamPF015351.7E-5401429IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.47467497IPR002885Pentatricopeptide repeat
PfamPF130412.5E-10497541IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.685498532IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.4E-10500533IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.314559593IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.958594624IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.9E-5597652IPR011990Tetratricopeptide-like helical domain
PfamPF130413.3E-13624672IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.397625659IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.2E-8627660IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.323660694IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.4E-5662694IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.821695725IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.9E-5755787IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.32761795IPR002885Pentatricopeptide repeat
CDDcd000181.43E-329911048No hitNo description
SMARTSM003801.6E-379911054IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-329911049IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-229911049IPR016177DNA-binding domain
PfamPF008473.2E-139911040IPR001471AP2/ERF domain
PROSITE profilePS5103225.5679911048IPR001471AP2/ERF domain
PRINTSPR003672.6E-119921003IPR001471AP2/ERF domain
PRINTSPR003672.6E-1110141030IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1058 aa     Download sequence    Send to blast
MSSFLRHSNT LSSSPLILSL VRHKHSSINS RTPHFLRLLN LCKTCEGLRP LTSLLIVQGL  60
VKDVFLVEQF VRSCFHLGSS HLALSLFQQI QRPSLGLQNL VIRYLSNHGL YHELLYVYLH  120
SGASGCPSDD FTFPFVIKAC AALAVIRTGK EVHGVVIRTG FEQNLVIQTA LVDFYAKTGC  180
MGMARQVIDR IPQPDLVAWN ALIAGYSSNG LNWEAFDVFG EILVMNLKPN LSTLATVIPV  240
CTRLGCMHTG KSLHCFALKS GYLSNNFLVP ALISMYAGDE DLCGARNLFD SVPEKNAVVW  300
NAMISAYTQM QKAISAFEMF RCMLRVDLQP NFVTFVSVIP SCENSSSLSF GESLHACVIK  360
HGSENQLPIL TALVSMYAKL GDTDSSQYLF EPMPSKNLLL WNSMISGYVY NGLWNLSLGV  420
FREMQFSGFV PDAVSIVSVL SACSKLEADL VGKSVHAFSI RKGFLSNLNL SNALLAFYSD  480
CHRLSYSITL LREMPTKNSI TWNTLISGCV HHCKMEKAVA FYHQMQKEGF QLDLVTLISI  540
LPSLVSFFRG LLRMGLEPDN VTVLSLVSAC VQLNSLNLAD SVTAYIIRKG FDKDLVISNA  600
LINMLARCGN ILSARKLFEG LVEKDSVSWN VMINGYGLHG DGEGALDLFL QMKLSGVKPN  660
GITYSSILSA CSHCGLVEQG RLVFNSMAER GISPEIEHYA CMVDLFGRTG NLTEAYGIVR  720
ALPFKPSTSM LESLLGACRI HEDVELGERI GRMLSESDPE NSRSHVMLYN VYAAAGRWGD  780
AERVRSEMEE RHLRKATWQA LTEPKAEARR RKAALSTSRG ATPTNSRGSV KSSWTTSGHP  840
PPHRNGTENF SRFSVYFSET IPGAKTDWTK MPSRMSRIQQ EQEHCIMVAA LKHVISGGSS  900
SGPTPEHPQP MTAVYNATCT QLAAGQPAQQ EKDMLAVLLD GDTCRLCGIP GCLGCNYFPP  960
TLPNRTKKPQ LSLGTGFAGM NVATTRKSKN KYRGVRQRPW GKWAAEIRDP RRAARVWLGT  1020
FETAEEAARA YDKAAVEFRG NRAKLNFPLN PDGNIVTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D2e-64838152335PLS9-PPR
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302450.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324700.0GU732470.1 Malus x domestica AP2 domain class transcription factor (AP2D46) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008340023.10.0putative pentatricopeptide repeat-containing protein At3g05240
TrEMBLA0A498KN960.0A0A498KN96_MALDO; Uncharacterized protein
STRINGXP_008340023.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-32redox responsive transcription factor 1