PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000252300
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 849aa    MW: 93648.7 Da    PI: 8.0476
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000252300genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS27.73.3e-097678241267
           GRAS  12 vssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalpps 67 
                    +++ d++  ++lL+++++++sp +  d+mqRla yf+ +L+ar+a+s++ +yk l ++
  MDP0000252300 767 IAAIDKRTGNELLKQIRQHSSPMAmgDAMQRLAPYFAHGLEARMAGSGTXIYKDLFVQ 824
                    6677888999**********997555**************************987554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.04E-7386463IPR029071Ubiquitin-related domain
PROSITE profilePS500539.831391461IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.901.8E-4392461No hitNo description
PROSITE profilePS5129415.637576635IPR017930Myb domain
SuperFamilySSF466893.68E-13578660IPR009057Homeodomain-like
SMARTSM007175.6E-7580633IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-9581631IPR009057Homeodomain-like
CDDcd116603.30E-15582632No hitNo description
PfamPF035141.1E-6767824IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MGLKKRLDFG FNGFQVPNIP RAPRSARRGP HRKSVKDGQI SAFELLASLA GKLLQESESS  60
ASSNASEGNL QPAFGIDVKL ERQDEHKPLK EECLDQGSSE ESVSLGLTSQ NINRKGIIKE  120
FPHADSDTVL ERTSVITSSD SSAKAGRHAK SVICSSRPTF QKYSGKVEGD SPGIVESCYG  180
NVATGIEVQG DSKPLETGSL KIANPCSSKD PTELHANYPA MLNGDSNVKL SLFRDPIPNA  240
SFSRHRNDIE LGSRDDDEKX SRCIKPSNRV KVXRPPPRVG GQRIRKLPSS KYWKATPKLR  300
EFEHYRYDGG VKPIYHKRKT FYNRERSQRD TLYKRRKLVD RSSVVTSDGG FSGESVSNSP  360
DNGDKTGPAA NGVSASVIGH QASFRSEESH VKLKIKSFRV PELVIEVSET ETVGSLKRTV  420
MDAVNAILRD GLSVGVLVQG KKMTDDYRTL MQMGISSKDS LDSLDFMLEP SPMQALPSLC  480
SGDPPSLSCE TSVXVTRSPG TPVLDSTMSD VLSDLPPITN SGSLAETKHE PVSSHIDILT  540
DKTMLESQAL VAIPEMSMEP LAVVPVSQKT KRSELAQRRT RRPFSVSEVE ALVTAVEELG  600
TGRWRDVKLR AFENADHRTY VDLKDKWKTL VHTAKISPQQ RRGEPVPQEL LDRVLAAHSY  660
CNLGPDLSTN SDGDSPEDSD FSNVVLKYIR QILMEEDKEE RPKCIMSLQH FKMQTQSFCE  720
LGDKLSSSPS DMTTNVDQNH ECGDEIHPSC SSHYTTTFRI SSSIRDIAAI DKRTGNELLK  780
QIRQHSSPMA MGDAMQRLAP YFAHGLEARM AGSGTXIYKD LFVQASIRLL MVFNGLASFN  840
VSRLGLVDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-53565662198Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316336KRKTFYNRERSQRDTLYKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.25781e-168leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008343536.20.0telomere repeat-binding protein 3-like
TrEMBLA0A498JL050.0A0A498JL05_MALDO; Uncharacterized protein
STRINGXP_008343536.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-86TRF-like 2