PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000251812
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 448aa    MW: 51480.3 Da    PI: 6.5818
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000251812genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.71.1e-26122218185
       trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                    +Wt+q+v++Li+a+++++e+ ++++           +kk++W++vsk+m+er +++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d 
  MDP0000251812 122 KWTDQMVKLLITAVSYIGEDTSSDCgsggrrkysvvQKKGKWKSVSKVMAERRYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDV 217
                    7*********************99888999999999**********************************************56999988888776 PP

       trihelix  85 l 85 
                    +
  MDP0000251812 218 I 218
                    5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-23120245No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEGNLSQGGG GLVPGGASFG GLDLQGSMRG HHQTQHQHTI HHHLPHPHQG SLVHPSIPEG  60
FPLKMGTMHH CDQTISMVDY NKGERGKNSA SDEDEPSYAE DGADGHPEAS KGKKGSPWQR  120
VKWTDQMVKL LITAVSYIGE DTSSDCGSGG RRKYSVVQKK GKWKSVSKVM AERRYHVSPQ  180
QCEDKFNDLN KRYKKLNDML GRGTSCQVVE NPALLDVIEY LTEKEKDDVR KILSSKHLFY  240
EEMCSYHNGN RLHLPHDPAL QKSLQRALKR DDPDNDDLRR HHHDDLDEDD QDMENDEHDD  300
FEENNALRGD NRGIYISEDS VKRLRQGQGR EDFNFGSSLN SQDSNKSSYS HPQILPQPDM  360
NQVLPDGTKA VWLQKQWVES RSFQLEEQKL QIQVEMLELE KQRLKWQRFS KKRDHELEKL  420
RLENERMKLE NERMILELKQ KEMGAGFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008352771.10.0uncharacterized protein LOC103416293
RefseqXP_017182556.10.0uncharacterized protein LOC103416293
TrEMBLA0A498K2Z80.0A0A498K2Z8_MALDO; Uncharacterized protein
STRINGXP_008352771.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-119