PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000251244
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 581aa    MW: 63723.7 Da    PI: 9.133
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000251244genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.51e-125075771793
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
             B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     lpk f++++  +k ++  ++l de+g++ ev +  +k++    l++GW++F+ +++L +gD +vF+l++ ++ + +
  MDP0000251244 507 GLPKYFCSKNL-PK-RDDIVILIDEDGNECEVIYLAEKRG----LSGGWRGFAIDHDLVDGDALVFQLIRPKTLKVR 577
                    69*****9994.43.4558***************545554....9***********************986555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.7204.2E-631314IPR016040NAD(P)-binding domain
SuperFamilySSF517351.36E-641261IPR016040NAD(P)-binding domain
CDDcd052282.17E-1173317No hitNo description
PfamPF013701.0E-293224IPR001509NAD-dependent epimerase/dehydratase, N-terminal domain
SuperFamilySSF517351.36E-64289317IPR016040NAD(P)-binding domain
Gene3DG3DSA:2.40.330.101.1E-14470577IPR015300DNA-binding pseudobarrel domain
CDDcd100176.03E-18474578No hitNo description
SMARTSM010191.2E-9493577IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-15506577IPR015300DNA-binding pseudobarrel domain
PfamPF023626.0E-10507576IPR003340B3 DNA binding domain
PROSITE profilePS508639.939508581IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MKILVTGASG YLGGRLCHAL LKQGHSVRAL VRPTSDLSSL PPPSSTGTAS LELVYGDVTD  60
YESLLSAFSN CDVVFHAAAV VEPWLPDPSK FFSVNVGGLK NVLRAVRETK TVQKIIYTSS  120
FFALGSTDGG VADETQSKAA ADKIALRAAQ QEELPLVLLY PGVIYGPGKL TAGNVVARLI  180
VERFNGRLPG YIGSGNDRYS FSHVDDVVEG HIRAMAKGRT GERYLLTGEN ASFKHVFDVA  240
AVITQTGRPK FGIPLWLIEV YGWASVLFSR VTGKLPLISP PTVYVLRHQW AYSCEKAKAE  300
LGYSPRGLKE GLGEQLQPSL DINCPIINDI VDSQDVLPQH VSISTTAYVP ANTNRGANTG  360
RKAVDFPRLQ NPIVQFSERG ASLNPNRIVF HMKRAKARTV EKQLVEVRXS SRVANLPTPV  420
YKEVAVVDRE MRPRRYSTNR HRDLSNRVYA SDEARDDATA RAEAFESDLG SDYPTMVKPM  480
LQSHVTGGIL AGILALILFN ACKLQQGLPK YFCSKNLPKR DDIVILIDED GNECEVIYLA  540
EKRGLSGGWR GFAIDHDLVD GDALVFQLIR PKTLKVRLQV S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wj7_A1e-45431617332Putative oxidoreductase
3wj7_B1e-45431617332Putative oxidoreductase
3wj7_C1e-45431617332Putative oxidoreductase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365112.20.0uncharacterized protein LOC103428773
TrEMBLA0A498JD230.0A0A498JD23_MALDO; Uncharacterized protein
STRINGXP_008378052.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1133623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-33B3 family protein