PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000248670

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

CPP

Protein Properties

Length: 1003aa MW: 109637 Da PI: 6.6892

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000248670	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.5	8.4e-16	488	524	3	39
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +k+CnCkkskClk+YC+Cfaag++C+e+C C++C+N MDP0000248670 488 CKRCNCKKSKCLKLYCDCFAAGVYCAETCACQGCFNI 524 79**********************************6 PP
2	TCR	50.2	5.2e-16	565	603	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a++ Cs+ C+C++CkN MDP0000248670 565 RHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCDGCKNV 603 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.2E-15	486	527	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.39	487	605	IPR005172	CRC domain
Pfam	PF03638	1.6E-11	489	523	IPR005172	CRC domain
SMART	SM01114	6.8E-17	565	606	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.6E-11	567	602	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence Send to blast
MDSPEIPKIK DNTSPSSDSP PVQESPVFSY ISNLSPIQPV KASHAVQGFP GLSSPPLVFT 60 SPRINTLRET SFLKSLFVVS VFAHFDSFII FTRPQYPRLS SVEKTKSHDE ARKFVDGTVD 120 SRKHITQLQM GLITDTQDCE TNSSSEGVDE YLADPMEMDS TNSCQSVNPC LKESINASES 180 EAPPEKAKED LDGKQFDAKP VKNKEHSDGE LPSSECPKVG SGLSIDNAFN GEYHQGFHNQ 240 GIGGRHQDDC DHNPPSPPGR LQIGQVYXDC TEKVGGTSKG MIGNMILHAP NKAKNDQGGM 300 HRRCLQFEEA PPCATGKGDS SSVEKVNNSE PPASTAELEI VQVPYAATSK RQMGASLPPR 360 YGGSSPLTVP KPSGIGLHLN SIVNAAPVVR GATTIKLADH YIGVQVMKSS SVVNHHLPEN 420 VRDETENSIA TSSSITQSPH TVEFERHGSP PEKSKLDSQN XDSYLELNQS SSQKKRKKTP 480 SSKDSDGCKR CNCKKSKCLK LYCDCFAAGV YCAETCACQG CFNIPDYEDT VLETRQQIEA 540 RNPLAFAPKI VQLEEEIQFT PASARHKRGC NCKKSMCLKK YCECYQANVG CSSGCRCDGC 600 KNVYGRKGDY VPIEHGVLKD TISDKAGKET FDEKLEMVAT KKDILSTDLY DSHNHTPLTP 660 SFHCSDHANN IPKSPCLPAS YLRSPESDLT IISSYEKSTR SPLRNSETGG ILLETSKELS 720 DMGYYHWRED YDNIGVADTF STRYDAAPTT CHXTPLSDLY SKASASSTSS RSDWKNASQA 780 QLCPGIQGLS SSSSLHWRSS PVTPMARLGG TKSSQGLDFD NGLYDILQEE TPEILKDSSN 840 PIKSVKVSSP NKKRVSPPHN HNHELGASSS GSLRSGRKFI LKAVPSFPPL TPCSNSEGQK 900 EMNGRDTDGV HSEYLVIPPL ATHIIVLKLS SKCLPLHVSC FSFHSGGVSG IYFLQLEAED 960 ICRHCYVGSV VRLECGNIFR YLTKNFPPFC DEQSFDLIGD TTP

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence Send to blast

MDSPEIPKIK DNTSPSSDSP PVQESPVFSY ISNLSPIQPV KASHAVQGFP GLSSPPLVFT  60
SPRINTLRET SFLKSLFVVS VFAHFDSFII FTRPQYPRLS SVEKTKSHDE ARKFVDGTVD  120
SRKHITQLQM GLITDTQDCE TNSSSEGVDE YLADPMEMDS TNSCQSVNPC LKESINASES  180
EAPPEKAKED LDGKQFDAKP VKNKEHSDGE LPSSECPKVG SGLSIDNAFN GEYHQGFHNQ  240
GIGGRHQDDC DHNPPSPPGR LQIGQVYXDC TEKVGGTSKG MIGNMILHAP NKAKNDQGGM  300
HRRCLQFEEA PPCATGKGDS SSVEKVNNSE PPASTAELEI VQVPYAATSK RQMGASLPPR  360
YGGSSPLTVP KPSGIGLHLN SIVNAAPVVR GATTIKLADH YIGVQVMKSS SVVNHHLPEN  420
VRDETENSIA TSSSITQSPH TVEFERHGSP PEKSKLDSQN XDSYLELNQS SSQKKRKKTP  480
SSKDSDGCKR CNCKKSKCLK LYCDCFAAGV YCAETCACQG CFNIPDYEDT VLETRQQIEA  540
RNPLAFAPKI VQLEEEIQFT PASARHKRGC NCKKSMCLKK YCECYQANVG CSSGCRCDGC  600
KNVYGRKGDY VPIEHGVLKD TISDKAGKET FDEKLEMVAT KKDILSTDLY DSHNHTPLTP  660
SFHCSDHANN IPKSPCLPAS YLRSPESDLT IISSYEKSTR SPLRNSETGG ILLETSKELS  720
DMGYYHWRED YDNIGVADTF STRYDAAPTT CHXTPLSDLY SKASASSTSS RSDWKNASQA  780
QLCPGIQGLS SSSSLHWRSS PVTPMARLGG TKSSQGLDFD NGLYDILQEE TPEILKDSSN  840
PIKSVKVSSP NKKRVSPPHN HNHELGASSS GSLRSGRKFI LKAVPSFPPL TPCSNSEGQK  900
EMNGRDTDGV HSEYLVIPPL ATHIIVLKLS SKCLPLHVSC FSFHSGGVSG IYFLQLEAED  960
ICRHCYVGSV VRLECGNIFR YLTKNFPPFC DEQSFDLIGD TTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-19	491	603	14	121	Protein lin-54 homolog
5fd3_B	1e-19	491	603	14	121	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	473	477	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ010165	2e-37	AJ010165.1 Glycine max mRNA for cysteine-rich polycomb-like protein (gpp1 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008394057.2	0.0	CRC domain-containing protein TSO1-like
Refseq	XP_017178490.2	0.0	CRC domain-containing protein TSO1-like
Refseq	XP_017178491.2	0.0	CRC domain-containing protein TSO1-like
TrEMBL	A0A498HNJ9	0.0	A0A498HNJ9_MALDO; Uncharacterized protein
STRING	XP_008394057.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8565	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	2e-63	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	MDP0000248670