PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000246184
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 430aa    MW: 47127.5 Da    PI: 9.7952
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000246184genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-20248297356
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  MDP0000246184 248 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAIAYDTAAYILRGE 297
                    8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.03E-29246304No hitNo description
PROSITE profilePS5103221.97247304IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-30247304IPR001471AP2/ERF domain
SMARTSM003801.4E-34247310IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-21247304IPR016177DNA-binding domain
PfamPF008471.8E-12248297IPR001471AP2/ERF domain
PRINTSPR003671.1E-10248259IPR001471AP2/ERF domain
PRINTSPR003671.1E-10270286IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEEKFPKMET FIEKQLPYSY FTRMATSNNI GSNLFGDHPA SWGGSGSKSP LSSESSSSSA  60
EDVSLSGSNL INNTSSPFVP LNFLETFPQL TRAQVSDQPP TSPPSLSSKS SRFPKLTLFL  120
QQPSLFDPSS SSSPSSSSSM QVEVVNSLGK TKGCNELSSL LTPSFPAPQA IDQIQHQPGM  180
IEWLKINQTI VNHSSKGSND YWLSTTKTQP MKHTGRSSSR LHQQQINQQQ KQPNNNLSSS  240
SSSQGKLFRG VRQRHWGKWV AEIRLPRNRT RVWLGTFDTA EEAAIAYDTA AYILRGEHAK  300
LNLPGLKHQL KASALKGTTA ALLEAKLQAI SSSQAHKKAI KESSSSESAS SNKHSAGDGG  360
DHKNIMINSN LSQNPTRKEW QFGLESKVGS HHHHHQQDLV STADVDAVQL SRMPSLDMDM  420
IWDALLVSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-20243304163ATERF1
3gcc_A7e-20243304163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008380561.10.0ethylene-responsive transcription factor ERF062
TrEMBLA0A1P8VHU40.0A0A1P8VHU4_9ROSA; DREB6.9
TrEMBLA0A498K4A50.0A0A498K4A5_MALDO; Uncharacterized protein
STRINGXP_008380561.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.17e-47ERF family protein