PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000245253
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 600aa    MW: 67238.1 Da    PI: 4.7085
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000245253genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2921.6e-892275981374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilkf 93 
                    lve Ll+ Ae v  ++ e+a +lL+    ++s++g+p++R++++f  AL +++ r++ +++ ++   +++ + + + ++  ++    +   P+ ++
  MDP0000245253 227 LVEFLLASAEKVGYQQYERAGNLLKXCDSRSSSTGNPVERVVHFFSXALLEKIDRETGRVAPKVlGNKQSFDVDIAMKIPNDTSltCQIKLPFGQV 322
                    57889**************************************************666666554244444444444444444333455568***** PP

           GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +++  qaI+e v+++++vH+iD++i +G+QW  L+qaLasR   +   l+iT+vg    + +e++eetg+rL +fA+++++pf+f++++++++ d
  MDP0000245253 323 VQFAGIQAIVENVAEAKKVHVIDLEIRNGVQWTGLMQALASRYdCPLELLKITAVGT---TCRESVEETGKRLGSFAQTMNLPFSFKIVMVEDMLD 415
                    ******************************************9445569********...69********************************** PP

           GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                    l+ ++++++++E++aV + ++l +++ ++  les    v+k++k+++P v vv+e ea+hns+ F++rf++al y++a+fd+le+ + r++ +r+ 
  MDP0000245253 416 LKEDMFELDSEETVAVYSEFALRSMVPKPDRLES----VMKVIKNIRPCVTVVTEVEANHNSPVFVTRFIDALFYFAAFFDCLETCIQRDDPNRSI 507
                    *************************977777777....********************************************************** PP

           GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +E +++g  i+n+va+eg+er+ r+ +   Wr+ + + G+++++ls++   qa+l+l++++ ++  +++ + ++l+lgWk+ pL s+S W+
  MDP0000245253 508 LESMYFGTGIRNIVANEGEERNIRNVKIDVWRAFFARYGMEEIELSSSSLYQADLILKNFPyGNSCTLNMDGKCLLLGWKGTPLHSLSLWK 598
                    *************************************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.779201577IPR005202Transcription factor GRAS
PfamPF035145.4E-87227598IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MTNAMFSFGD FNFGGVHDIF GSNEKGFDGM EAENNVGKQV NLFGAEEWGK LGEFGSVDSD  60
HGFCGNDYSS GGNLXPKYQQ EEQQQPLIPY YGLYDAMQFD PLSVPFQACL GKIAKLEDIP  120
NLVPHVEPKK EKRDPFSSLA GLDLLNSYGS GFKRLNGERN FESSNYKXCT DQVATGRKLS  180
TEEIMRVAGA RFIQTYSQVS DVPSMLSHPF GSSFSXLSDE EARDVELVEF LLASAEKVGY  240
QQYERAGNLL KXCDSRSSST GNPVERVVHF FSXALLEKID RETGRVAPKV LGNKQSFDVD  300
IAMKIPNDTS LTCQIKLPFG QVVQFAGIQA IVENVAEAKK VHVIDLEIRN GVQWTGLMQA  360
LASRYDCPLE LLKITAVGTT CRESVEETGK RLGSFAQTMN LPFSFKIVMV EDMLDLKEDM  420
FELDSEETVA VYSEFALRSM VPKPDRLESV MKVIKNIRPC VTVVTEVEAN HNSPVFVTRF  480
IDALFYFAAF FDCLETCIQR DDPNRSILES MYFGTGIRNI VANEGEERNI RNVKIDVWRA  540
FFARYGMEEI ELSSSSLYQA DLILKNFPYG NSCTLNMDGK CLLLGWKGTP LHSLSLWKFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-3925059826375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947847.10.0DELLA protein RGL1-like
TrEMBLA0A192ADG30.0A0A192ADG3_PYRPY; DELLA protein RGL1
STRINGXP_008390567.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-60RGA-like 2