PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000245252

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 441aa MW: 49142 Da PI: 8.006

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000245252	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	271.6	2.5e-83	55	428	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl.....fsevsPi 90 l +lLl+cAe v++++ +a++l + l+s++g+++qR++ yf +AL+++ r ++ ++++ ++++ ++++++e++aal+ f ev P+ MDP0000245252 55 LAHLLLACAEKVAKKQYGCAKKLQNLCDFLSSSSGNSVQRVVYYFSKALQQKADReTGRNTSQGSESRDVATMHVEEAMAALSPslmacFLEV-PF 149 579***************9998888999*********************67777777778888888777777777644545557775. PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 ++++ ++ qaI+e+v++ +++H +D+ i G++ + L+qaLa+R e p +l++T+vg +s++++e tg+rLa+fAe+l++pf f++ ++k+ MDP0000245252 150 FQVTEFAGIQAIVESVASTKKIHFVDLAIRTGAHCIVLMQALATRYECPIeMLKVTAVGV---KSRKKIEDTGRRLAQFAEALKLPFTFKIAMVKD 242 *******************************************9666559****...689*********************9 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 ++d + +++++gEa+aV + l l ++++++ +les ++k+++sl+P+++vv e ea+hns+ F +rf eal yysa+f++l+a + r s MDP0000245252 243 IKDXKEGIFELDTGEAVAVYCPLLLSSIMSQPNCLES----LMKALRSLNPRLMVVKEVEANHNSPIFINRFYEALFYYSAFFECLDACMDRGSAL 334 *************************99999999....*************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+ +E+ +l+ +i+n+va e +er++ + + Wr+ ++++G+ ++ ls + qa+l ++++ ++ ++ + ++l gWk+ p++s+S+W+ MDP0000245252 335 RMELEETYLSLDIKNIVASEDEERVNXRMKIDGWRSLFGKCGMVEADLSLSSLYQADLTAKQFAcGRSCTMGTNGKCLXVGWKGTPILSLSVWK 428 ************************************************************9999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.098	29	407	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.5E-81	55	428	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MSCASGLSTV EVMRVARERF IQFSSRRQTD DCMADHVLGS TPFGLSDQET KDVGLAHLLL 60 ACAEKVAKKQ YGCAKKLQNL CDFLSSSSGN SVQRVVYYFS KALQQKADRE TGRNTSQGSE 120 SRDVATMHVE EAMAALSPSL MACFLEVPFF QVTEFAGIQA IVESVASTKK IHFVDLAIRT 180 GAHCIVLMQA LATRYECPIE MLKVTAVGVK SRKKIEDTGR RLAQFAEALK LPFTFKIAMV 240 KDIKDXKEGI FELDTGEAVA VYCPLLLSSI MSQPNCLESL MKALRSLNPR LMVVKEVEAN 300 HNSPIFINRF YEALFYYSAF FECLDACMDR GSALRMELEE TYLSLDIKNI VASEDEERVN 360 XRMKIDGWRS LFGKCGMVEA DLSLSSLYQA DLTAKQFACG RSCTMGTNGK CLXVGWKGTP 420 ILSLSVWKFH AVNXKTFKRL L

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MSCASGLSTV EVMRVARERF IQFSSRRQTD DCMADHVLGS TPFGLSDQET KDVGLAHLLL  60
ACAEKVAKKQ YGCAKKLQNL CDFLSSSSGN SVQRVVYYFS KALQQKADRE TGRNTSQGSE  120
SRDVATMHVE EAMAALSPSL MACFLEVPFF QVTEFAGIQA IVESVASTKK IHFVDLAIRT  180
GAHCIVLMQA LATRYECPIE MLKVTAVGVK SRKKIEDTGR RLAQFAEALK LPFTFKIAMV  240
KDIKDXKEGI FELDTGEAVA VYCPLLLSSI MSQPNCLESL MKALRSLNPR LMVVKEVEAN  300
HNSPIFINRF YEALFYYSAF FECLDACMDR GSALRMELEE TYLSLDIKNI VASEDEERVN  360
XRMKIDGWRS LFGKCGMVEA DLSLSSLYQA DLTAKQFACG RSCTMGTNGK CLXVGWKGTP  420
ILSLSVWKFH AVNXKTFKRL L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-32	59	428	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008351160.2	0.0	DELLA protein GAI1-like
TrEMBL	A0A498IDK1	0.0	A0A498IDK1_MALDO; Uncharacterized protein
STRING	XP_008351160.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	5e-57	RGA-like 1

Link Out ? help Back to Top
Phytozome	MDP0000245252