PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000243278
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 1013aa    MW: 113801 Da    PI: 5.7368
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000243278genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012866888123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k+F +   L  H+r+H
  MDP0000243278 866 HKCRICNKVFGTYQALGAHQRVH 888
                    79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001675.05E-4226274No hitNo description
PROSITE profilePS5015710.138488515IPR007087Zinc finger, C2H2
SMARTSM003550.38488510IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-7488510IPR007087Zinc finger, C2H2
SuperFamilySSF576673.75E-5488510No hitNo description
PROSITE patternPS000280490510IPR007087Zinc finger, C2H2
SuperFamilySSF576673.75E-5562589No hitNo description
PROSITE profilePS5015710.014567594IPR007087Zinc finger, C2H2
SMARTSM003550.48567589IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280567589IPR007087Zinc finger, C2H2
PfamPF139120.011568591IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162598625IPR007087Zinc finger, C2H2
SMARTSM003554.8598620IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280600620IPR007087Zinc finger, C2H2
PfamPF139120.028600622IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-4864889IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.37E-9865888No hitNo description
SMARTSM003550.003866888IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741866893IPR007087Zinc finger, C2H2
PfamPF139121.7E-7866890IPR007087Zinc finger, C2H2
PROSITE patternPS000280868888IPR007087Zinc finger, C2H2
SuperFamilySSF576675.37E-9927954No hitNo description
Gene3DG3DSA:3.30.160.608.3E-4930958IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.279932959IPR007087Zinc finger, C2H2
SMARTSM003550.14932954IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-9932954IPR007087Zinc finger, C2H2
PROSITE patternPS000280934954IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1013 aa     Download sequence    Send to blast
LLHVSSIARK VVFKIKSTAI FGVLTFEKLI FGCFCQLPGR QYLQDKMINK RPFDVEDSYE  60
VACKHPRRLE HANEPAPIVD TFSLSSSPQK XQXSDGEGDG SFSKCPDEGR SASDLGTESS  120
NETYKELETG ASGSSFRFWW ANNNMFEAHE KLMGTXIISM PELDTFENXL CEDVXARNNC  180
KCADAGSVRC VXXHVMEARE KLREDLGHHL XEELGFYEMG EEVAEKWTKE EEXAFHDAIX  240
SNPASLGKNF WHHLSVAFPL RPHKDLVSYY FNVFMLXKRA EQNRFDPLNI DSDDDEWQKS  300
ELGVXNDDKD ALVESPVNLD APAYNQVEHL GCFNEHIEDA DDVDGCNDGA DXVGCDGIKD  360
EDAGDIDDGS GAHVENPPGD SGGATETXLL DKTPSTRQLS YMLHLRRXKI QELQCRMTTR  420
IFKYAKHLDW PASAQLDVEX AKHPLFLELI QQFFLECGGK IQTFSENWIP SRFWDLGSFA  480
FLVKMMEHVC KLCKKSFVSG RVLGGHMRCH GARKSAKTEK MIEMCRVDFE VEDDDHAGYG  540
LRRNPKKSWK FSGDSKFKAS AGDETVCRCR VCGKGFDSMR AMFGHMXHHS GRERKETRSC  600
EVCCKGFESL RALATHSRCH SERMRGTDGL ETVSSSKKLP VDSCQCSSET IGLIRRKRSK  660
RLRYKNTNSS CSFSSFSVNE SKYVTEFGEE VVEGAICLMI ISGSGSNLGR ISSVTESSDN  720
NSLSLEVQSP SQKNWIMXNK GGVSGCDVCD DTVKLVDCIS DCKNVSDEKK VFEFSENGPW  780
FXSDEEKXVE MEDRFSRGAG YKRPRLDGET AFGLCDTEVE MKVDIIEEVE SDVAAFGSMK  840
SGLNNKPMLY ATESEVFADS QKKREHKCRI CNKVFGTYQA LGAHQRVHKS TSNSSAVKIE  900
DHEDRIPIAK LECSXNSAAE GETERVXENK GHKCSICLKV FATGQALGGH KRVHFGKDPE  960
RGAQESRVLK QQISNICDAF DLSRPVENGD VEFKSWWLGN EHKQELLMGL MPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379850.30.0zinc finger protein 43-like
TrEMBLA0A498J4T60.0A0A498J4T6_MALDO; Uncharacterized protein
STRINGXP_008379850.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.17e-17C2H2-like zinc finger protein