PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000242979
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 457aa    MW: 49247.5 Da    PI: 6.8035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000242979genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20229278255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  MDP0000242979 229 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 278
                    7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.7E-33229287IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22229287IPR016177DNA-binding domain
CDDcd000183.23E-21229288No hitNo description
PfamPF008474.1E-14229278IPR001471AP2/ERF domain
SMARTSM003803.0E-37229292IPR001471AP2/ERF domain
PROSITE profilePS5103225.712229286IPR001471AP2/ERF domain
PRINTSPR003671.3E-11230241IPR001471AP2/ERF domain
PRINTSPR003671.3E-11252268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MCLLKVANQR SSGGGGQYDR FGSQNDSTDV TAVDIDNINY GGVGLESPPP YHQQHVSLST  60
PTMFLGYSQA ATEMSAMVSA LTHVVSGQRG SDSWGHVGSG GVTSSFGQLY SSSFPSASPL  120
SAAFSSSASP GSHNWVGQKR GREEDLDSAS ASASAQTQFM ESGNRAFRGG YSDYRGTQSE  180
SPSGGASATV TEESTNFSTA TVSATTAVPT TPSSTESVSF EETGERKRRY RGVRQRPWGK  240
WAAEIRDPHK AARVWLGTFD TAEAAARAYD EAALRFRGNR AKLNFPENVR LVQPPPPPPT  300
LQTFNSNSRP TQYAQPLQPP PLPQPPQQQL YHSQPAFQPS SDLLRDYFDY SQLLQSSADF  360
HPQQQQQQQP SSLLQKMYYN SQLASLQSSF LQPASASTPS SALPSSASSS ASFPLFFSEQ  420
NQQMGFFRQP QNPNQGGPSD FQAPSWSHSG NNPSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22228289163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF4123500.0JF412350.1 Malus x domestica ethylene response factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372740.20.0ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A498JXU90.0A0A498JXU9_MALDO; Uncharacterized protein
STRINGXP_008372740.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-23ethylene response factor 110
Publications ? help Back to Top
  1. Akagi A,Dandekar AM,Stotz HU
    Resistance of Malus domestica fruit to Botrytis cinerea depends on endogenous ethylene biosynthesis.
    Phytopathology, 2011. 101(11): p. 1311-21
    [PMID:21809978]