PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000242829
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 544aa    MW: 60915 Da    PI: 4.5838
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000242829genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.63.7e-1091665371374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilkf 93 
                    lv+ Ll+cAeav  +d++la++lLa++   +sp gd++qR+  +f+ +L++rl+  +  ++  +++    + +    +++l a++l+++++P++ f
  MDP0000242829 166 LVHMLLACAEAVGCRDTKLADSLLAQIWASVSPWGDSLQRVSYCFAMGLKSRLSLlQNVNINGTFNNDMMDVSVtsRDDKLEAFQLLNQTTPYIAF 261
                    689**************************************************99666677777765555443345999***************** PP

           GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rle 187
                    ++++aN+aI +a++g+e +HiiD+++++ lQWp+L+++LasR egpp +lRiTg+++   ++  ele+  + L + A++lg+p ef ++ +  + +
  MDP0000242829 262 GFMVANEAICQAAQGKEDLHIIDLGMEHTLQWPSLIRTLASRXEGPPkKLRITGLVE--DHNLFELEAGMRALVEEASSLGIPTEFXLISEPvKPS 355
                    *******************************************888889********..5699************************974335899 PP

           GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ e+L+ ++gEal Vn++++lh+ ++es  + +   ++L+++k+l P v+++veq+a+hn++ Fl rfle+l++ysa+fdslea+lpr+s +r+
  MDP0000242829 356 LLTRENLDXREGEALFVNSIMHLHKYVKESRGSLK---AILQALKKLGPSVLTLVEQDANHNGPFFLGRFLESLHFYSAIFDSLEASLPRNSPQRM 448
                    9**************************88776666...9********************************************************* PP

           GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    k+Er+ ++ ei+n+va eg +r+erhe++ +Wr++l++aGF+ + l+   ++qa+++l+ ++ dgy++ +e+g+l+lgWk+rp++ +SaW+
  MDP0000242829 449 KIERQHFADEIRNIVAFEGLNRIERHERADQWRRQLGRAGFQVMGLK--CTSQARMMLSVYGCDGYTLASEKGCLLLGWKGRPIMLASAWQ 537
                    *******************************************9996..679**************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.511140519IPR005202Transcription factor GRAS
PfamPF035141.3E-106166537IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MEXFNAWLSF PLHENLNHDL AIRRFCPARV EQEQGGGGGG DGEWDEMLNE IEFSSSSHTT  60
STPCLPPSEV DEFVDSFINM DHCIDDHDIQ SMEKQQSSGS IEYYDQDGIE TFSMADDLYG  120
DVLMMMEEED DHVDMSGLAE DFWVAKTEMM PGVEVASHGV DQGLNLVHML LACAEAVGCR  180
DTKLADSLLA QIWASVSPWG DSLQRVSYCF AMGLKSRLSL LQNVNINGTF NNDMMDVSVT  240
SRDDKLEAFQ LLNQTTPYIA FGFMVANEAI CQAAQGKEDL HIIDLGMEHT LQWPSLIRTL  300
ASRXEGPPKK LRITGLVEDH NLFELEAGMR ALVEEASSLG IPTEFXLISE PVKPSLLTRE  360
NLDXREGEAL FVNSIMHLHK YVKESRGSLK AILQALKKLG PSVLTLVEQD ANHNGPFFLG  420
RFLESLHFYS AIFDSLEASL PRNSPQRMKI ERQHFADEIR NIVAFEGLNR IERHERADQW  480
RRQLGRAGFQ VMGLKCTSQA RMMLSVYGCD GYTLASEKGC LLLGWKGRPI MLASAWQAHS  540
VSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6317354026382Protein SCARECROW
5b3h_A2e-6317354025381Protein SCARECROW
5b3h_D2e-6317354025381Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372004.20.0DELLA protein RGL1-like
TrEMBLA0A251PJY80.0A0A251PJY8_PRUPE; Uncharacterized protein
STRINGXP_008372004.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-78RGA-like 1