PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000241650
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 479aa    MW: 52320.3 Da    PI: 5.1459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000241650genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-18291341155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  MDP0000241650 291 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 341
                    68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-12291341IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-21292349IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-31292350IPR001471AP2/ERF domain
PROSITE profilePS5103223.42292349IPR001471AP2/ERF domain
SMARTSM003802.1E-37292355IPR001471AP2/ERF domain
PRINTSPR003677.7E-10293304IPR001471AP2/ERF domain
CDDcd000181.80E-30293351No hitNo description
PRINTSPR003677.7E-10315331IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
HFLGYGHGGK RVAHLIVICP VLLWIMCRMS RDGGREARMS KCGVVGGAKL AIERGEGSGE  60
MPSNKGSNNG GKWGGFSWEG EGGSLDGLQY EGFAQGISEY AGEGNEGDDE DHIDVNEDLD  120
PCGLVGTSPF QQSGLALRGA TAFSKAFSNK CFCNEILILS STEARCQREE ISDGRGKDVK  180
DGCILMIEFS DIFGHLIRER NLISITTWIT RVFSLRHSTN AYKVPLAMSA DQPQSSETES  240
NSNSSTSASP PSSPSSLQNQ NPQKPSSPIH QETDLPTKNN AKRVRDSSKH PVYRGVRMRN  300
WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDVAALSIK GNSAILNFPE LSNSLPRPVS  360
LAPRDVQAAA TKAAQMHQFD SIRSMSPSIL SSSSSSSLSS LVSAIDNLST ESDELSEIVE  420
LPSLSYESTE LRSEFVFVES EDQWVYPPPW LQRVEEFECG ELGAASSVGF EGLLWDYNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-172883531076Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.304480.0bud| cell culture| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324730.0GU732473.1 Malus x domestica AP2 domain class transcription factor (AP2D49) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292812.11e-179ethylene-responsive transcription factor TINY-like
TrEMBLD5L1331e-178D5L133_MALDO; AP2 domain class transcription factor
STRINGXP_008378086.11e-179(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-69ERF family protein