PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000239214

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 435aa MW: 48149.2 Da PI: 8.1463

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000239214	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H MDP0000239214 148 FTCNFCKRDFSTSQALGGHQNAH 170 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.56E-6	145	175	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.8E-4	146	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.448	148	175	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	150	170	IPR007087	Zinc finger, C2H2
Pfam	PF14111	2.1E-12	323	432	IPR025558	Domain of unknown function DUF4283

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MAEEYQSPFE ASNISVASDG TPPPKKDSPP PLPPPDLPDQ KMKMKMKEKV IIDDSDDEQP 60 KPKQPSPAVG SSLSPTQNSR HLLDPKLSNN DPGHVSGALS SKELVLFNPL NQGSSSNLGG 120 LGLLSQRNEP RDENPRGDDG KKPQSRVFTC NFCKRDFSTS QALGGHQNAH KQERALAKRR 180 QGGLGMDHNL FGHSHPYYSP YSSITQHPLY GSYGRSLGIR MDSMIHKPSY PWSSXTSGFG 240 RFGHGVGSGG WSSSRPGXLM NNFQSSIDRL NLDGLHANTT SSGTLGLPGT ISASRFDQEI 300 GSARNFGGSN FGINRPIIGG DVLGEXLTEK TVNAEVFIDR FMFLWRGKEG VSIRDLGDRX 360 FLIRFVAKWD MHRVLESEFP WTFKEDFVMV RDCTNMHDEW WQKLSMGAMW VQIHKVPPLS 420 MMAAVAMEIG GKLEW

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MAEEYQSPFE ASNISVASDG TPPPKKDSPP PLPPPDLPDQ KMKMKMKEKV IIDDSDDEQP  60
KPKQPSPAVG SSLSPTQNSR HLLDPKLSNN DPGHVSGALS SKELVLFNPL NQGSSSNLGG  120
LGLLSQRNEP RDENPRGDDG KKPQSRVFTC NFCKRDFSTS QALGGHQNAH KQERALAKRR  180
QGGLGMDHNL FGHSHPYYSP YSSITQHPLY GSYGRSLGIR MDSMIHKPSY PWSSXTSGFG  240
RFGHGVGSGG WSSSRPGXLM NNFQSSIDRL NLDGLHANTT SSGTLGLPGT ISASRFDQEI  300
GSARNFGGSN FGINRPIIGG DVLGEXLTEK TVNAEVFIDR FMFLWRGKEG VSIRDLGDRX  360
FLIRFVAKWD MHRVLESEFP WTFKEDFVMV RDCTNMHDEW WQKLSMGAMW VQIHKVPPLS  420
MMAAVAMEIG GKLEW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008344560.2	0.0	uncharacterized protein LOC103407407
TrEMBL	A0A498JIM9	1e-154	A0A498JIM9_MALDO; Uncharacterized protein
STRING	XP_008344560.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-16	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	MDP0000239214