PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000238851
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 1109aa    MW: 124372 Da    PI: 6.3495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000238851genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.21.1e-09586627351
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                     +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  MDP0000238851 586 LRGVYF--KNMKWHAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 627
                    59**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0002884220253IPR019734Tetratricopeptide repeat
SuperFamilySSF484522.47E-22221331IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.101.1E-23222335IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5029315.324236321IPR013026Tetratricopeptide repeat-containing domain
PROSITE profilePS500059.027254287IPR019734Tetratricopeptide repeat
SMARTSM000280.0099254287IPR019734Tetratricopeptide repeat
PROSITE profilePS500055.812288321IPR019734Tetratricopeptide repeat
SMARTSM0002827288321IPR019734Tetratricopeptide repeat
SuperFamilySSF497643.14E-30374474IPR008978HSP20-like chaperone
Gene3DG3DSA:2.60.40.7902.8E-26376465IPR008978HSP20-like chaperone
PROSITE profilePS5120315.669376465IPR007052CS domain
CDDcd064662.51E-27382465No hitNo description
PfamPF049696.2E-15382455IPR007052CS domain
SMARTSM003806.0E-4585642IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-7585630IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-5588631IPR001471AP2/ERF domain
SuperFamilySSF520582.55E-9709786IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.0E-7711775IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.55E-9830964IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.0E-7841916IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5120311.78610281109IPR007052CS domain
SuperFamilySSF497644.06E-1810301109IPR008978HSP20-like chaperone
PfamPF049694.6E-1110341108IPR007052CS domain
Gene3DG3DSA:2.60.40.7901.8E-1610371109IPR008978HSP20-like chaperone
CDDcd064666.11E-1810381109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1109 aa     Download sequence    Send to blast
MSSMVELHLN HSPKLTEILG LHKSLNTMRR IHMEGCTNLT ADFRKNIIQG WTSCGHGDIF  60
LXGIYDIPEW FQIVGIHEPN DVRFKVPXNF RGLTVCCVFK TYCPGFTVTN ITKRKALHTW  120
DESTCWVADS VLRLQSVLSN DVLHLQSGDE VSISAVTKAH GRGRVIGRVM KTGVNLVWDD  180
GNAGDKYTSI EEIGAVPRNN SSEETLPSPS VHTDGCSPMA SDLEKCANEA FIDDCFKLAV  240
DLYTHAIAFN PQSAELYTNR AQANIKSGNL TEAVADANKA IEFDPLXYKA YLRKGIACIK  300
LXEYQTAKAT LEIGAPLAPH ETRFANLIKE CDEKIAEETA VLPTASLENI TENVIPAKDV  360
QPASQPSNQV TVASVKPKYR PEFYQKPEEV VVTIFAEGIP AKDVNVDFGE QKLGVSIDVA  420
GEDTYYFQTH LFGKIIPEMC RFDVLSTKVE IRLAKAEPLH WTSLEFSEDN PVPLKVTGPV  480
VGVPSPSYLS SKPRTNPVTV HPMPSNDANQ PDGVILACLG HLSDRISTFF VNINVCMNTI  540
VKAEPRSFIA SGFSLSEEQH DVAGPPVKHR KQHRXKYAQN QEPSLLRGVY FKNMKWHAAI  600
KVDKKQIHLG TVGSQEEAAH LYDRAAFMCG REPNFELSEE EKQELRKFKW DEFLVMTRHA  660
ITNKKHMRRQ GAESEKRSES PQLEDSDWED DXEEVSGLSA SEDAEQDIFS SESFRNMXSL  720
RLLKLKNIKL TGSYHHLSKD LRWLCWHGFP XKVIPDDFDQ PNLVAIDLSY RLILVXEDTD  780
VKYWSLMAMI SQXFAFSLLX DSIPKDLGRR VGYNDKPRTI FNCKIEEPDI FISMGFERVT  840
INPPSLSGLF KLKMLDLSYC KDLLESKSVH CIEKMPNFSE MSSMVELHLK YSPKLTEILG  900
LHKSLNTMRR IHMEGCTNLT ADFRKNMLQR IDSLLCFRNV LSWINCYKFT KGKALHIWGD  960
STSNVANSVL HLQSVLSNDV LHLQSGDEVS ISAVTEAHGR GRVMKTGVNL FWDDGDGGDA  1020
YSSNDEIGAV PSNTSSDEKP EEVVVTIFTK GMAAKDVNVE FGEQILSVSI DVAGEGTYYF  1080
QPRLFGKIIP TRCRFDVLST KVGIRLAKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jki_S4e-353781109188SGT1-LIKE PROTEIN
2jki_T4e-353781109188SGT1-LIKE PROTEIN
2jki_U4e-353781109188SGT1-LIKE PROTEIN
2xcm_C4e-353781109289SGT1-LIKE PROTEIN
2xcm_D4e-353781109289SGT1-LIKE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1831010.0GU183101.1 Malus hupehensis sgt1-b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347425.10.0PREDICTED: TMV resistance protein N-like
RefseqXP_009347433.10.0PREDICTED: TMV resistance protein N-like
TrEMBLA0A498J3I50.0A0A498J3I5_MALDO; Uncharacterized protein
STRINGXP_008348554.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-39ERF family protein