PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000238848
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 810aa    MW: 91473.2 Da    PI: 6.6849
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000238848genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.6e-10587628351
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                     +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  MDP0000238848 587 LRGVYF--KNMKWHAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 628
                    59**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0002884220253IPR019734Tetratricopeptide repeat
SuperFamilySSF484527.4E-23221331IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.106.6E-24223336IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5029315.459236321IPR013026Tetratricopeptide repeat-containing domain
SMARTSM000280.0083254287IPR019734Tetratricopeptide repeat
PfamPF131810.0017254285IPR019734Tetratricopeptide repeat
PROSITE profilePS500058.555254287IPR019734Tetratricopeptide repeat
SMARTSM0002814288321IPR019734Tetratricopeptide repeat
PROSITE profilePS500055.841288321IPR019734Tetratricopeptide repeat
SuperFamilySSF497648.77E-30374475IPR008978HSP20-like chaperone
Gene3DG3DSA:2.60.40.7901.1E-25377466IPR008978HSP20-like chaperone
PROSITE profilePS5120315.473377466IPR007052CS domain
PfamPF049692.7E-14383456IPR007052CS domain
CDDcd064663.66E-27384466No hitNo description
SMARTSM003806.0E-4586643IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-7586631IPR016177DNA-binding domain
PfamPF008473.2E-4587629IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-5589632IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MSSMVELHLN HSPKLTEILG LHKSLNTMRR IHMEGCTNLT ADFRKNIIQG WTSCGHGDIF  60
LSGIYDIPEW FQIVGIHEPN DVRFKVPXNF RGLTVCCVFX TYCPGFTVTN ITKRKALHTW  120
XESTCWVADS VLRLQSVLSN DVLHLQSGDE VSISAVTKAH GRGRVIGRVM KTGXNLVWDD  180
GNAGDKYTSI EEIGAVPRNN SSEETLPSPS VHMDGCLPMA SDLEKCANEA FIDDCFKLAV  240
DLYTHAIAFN PQSAELYTNR AQANIKSGNL TEAVADANKA IEFDPLLYKA YLRKGIACIK  300
LEEYQTAKAT LEIGAPLAPH ETRFANLIKE CDEKIAEETA VLPTASLEKN ITENVIPAKN  360
VQPASQPSNQ VTTTYVKPKY RPAFYQKPEE VVVTIFAEGI SAKDVNVDFG EQKLGVSIDV  420
AGEDTYHFQT RLFGKIIPEM CRFDVLSTKV EIRLAKAEPL HWTSLEFSED NPVPLKVTGP  480
VVGVLSPSYL SSKPRTNPVT VHPMPLNDAN QPDGVLLACL GHSSDRISTF FVNIHVCMNT  540
IVKAEPRSFI ASGFSLSEEQ HDVAGPPVKH RKQHRXKYAQ NQEPSLLRGV YFKNMKWHAA  600
IKVDKKQIHL GTVGSQEEAA HLYDRAAFMC GREPNFELSE EEKQELRKFK WDEFLVMTRH  660
AITNKKHMRR QGAESEKRSE SPQLEDSDWE DDXEEFDTRS FSSESFRNMX SLRLLKLKNI  720
KLTGSYHHLS KDLRWLCWHG FPXKVIPDDF YQPNLVAIDL SYRLIRVCED TDVDLGRRVG  780
YNDKPRSIFN CKIEEPDIFI SMGFERVTIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jki_S4e-33379466188SGT1-LIKE PROTEIN
2jki_T4e-33379466188SGT1-LIKE PROTEIN
2jki_U4e-33379466188SGT1-LIKE PROTEIN
2xcm_C5e-33379466289SGT1-LIKE PROTEIN
2xcm_D5e-33379466289SGT1-LIKE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1831010.0GU183101.1 Malus hupehensis sgt1-b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347425.10.0PREDICTED: TMV resistance protein N-like
RefseqXP_009347433.10.0PREDICTED: TMV resistance protein N-like
TrEMBLA0A498J3I50.0A0A498J3I5_MALDO; Uncharacterized protein
STRINGXP_008348554.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.21e-39ERF family protein