PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000237978
Common NameL1a
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 639aa    MW: 70235.3 Da    PI: 5.1025
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000237978genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.76.3e-1362686271374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv+ L++cAeav++++++la+al++++  la +++ +m+++a++f+eALa+r++r    +y    p++    ++s + + +  f+e++P+lkf+h+
  MDP0000237978 268 LVHGLMACAEAVQQNNFNLAKALVTQIGYLAGSQAGAMRKVATFFAEALAQRIFR----VY----PQSPI--DHSFSDMLQMHFYETCPYLKFAHF 353
                    6899***************************************************....44....33333..23444444556************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    taNqaIle+++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+s++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ +
  MDP0000237978 354 TANQAILESLQGKTRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPASDNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDAS 449
                    ************************************************************************************************ PP

           GRAS 193 eLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    +L++ p   E++aVn+v++lh+ll++++++e+    vL++vk+++P++v+vveqea+hn++ F++rf e+l+yys+lfdsle +   +++ +++++
  MDP0000237978 450 MLELGPseVESVAVNSVFELHKLLARPGAIEK----VLSVVKQMKPEIVTVVEQEANHNGPVFMDRFNESLHYYSTLFDSLEGS---ANSRDKVMS 538
                    ****9977899*********************....**********************************************99...58999999* PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +++lg++i+nvvaceg +r+erhetl++Wr+r+++a F pv+l+++a kqa++ll+ ++ +dgyrvee++g+++l W++rpL+++SaW+
  MDP0000237978 539 EVYLGKQICNVVACEGVDRVERHETLAQWRARFGSADFVPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCMMLAWHTRPLIATSAWK 627
                    ****************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.4E-3452125No hitNo description
PfamPF120412.2E-3552119IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.368242606IPR005202Transcription factor GRAS
PfamPF035142.2E-133268627IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MKREHQTHQL NQYPPPQYPD PSMASTSAGG GGGFCKAKMW EDESQRIDGG MDELLAVLGY  60
KVRSSDMAEV AQKLEQLEEF MGCAQEDGLS QLASDTVHYN PADLSTWLES MISEINLPPP  120
NFDPLTGGAV AGMQPNQQQV QLVDDPFLAR GESSITTVDF PDQRKSKSIS TSPPQTVFED  180
CNSSSSYYDF KSIPGNAVFT QTRLDSPSRE LKRLKSSSGS SPSELLFNRP AASSLPQPQQ  240
PISLPATAES SPTRPALIVD SQENGVRLVH GLMACAEAVQ QNNFNLAKAL VTQIGYLAGS  300
QAGAMRKVAT FFAEALAQRI FRVYPQSPID HSFSDMLQMH FYETCPYLKF AHFTANQAIL  360
ESLQGKTRVH VIDFSMNQGM QWPALMQALA LRPGGPPAFR LTGIGPPASD NSDHLQEVGW  420
KLAQLAETIH VEFEYRGFVA NSLADLDASM LELGPSEVES VAVNSVFELH KLLARPGAIE  480
KVLSVVKQMK PEIVTVVEQE ANHNGPVFMD RFNESLHYYS TLFDSLEGSA NSRDKVMSEV  540
YLGKQICNVV ACEGVDRVER HETLAQWRAR FGSADFVPVH LGSNAFKQAS MLLALFAGGD  600
GYRVEENDGC MMLAWHTRPL IATSAWKPAY NSVMAHRVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-5927562826380Protein SCARECROW
5b3h_A5e-5927562825379Protein SCARECROW
5b3h_D5e-5927562825379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.10530.0bud| fruit| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0078850.0DQ007885.1 Malus x domestica DELLA protein (L1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951267.10.0DELLA protein GAIP-B-like
SwissprotQ6EI050.0GAIPB_CUCMA; DELLA protein GAIP-B
TrEMBLQ0HA710.0Q0HA71_MALDO; DELLA protein
STRINGXP_009351505.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein