PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000235134
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 525aa    MW: 59090 Da    PI: 4.3764
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000235134genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS132.83.9e-411655252367
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++lL ++ ea++ g+ el + ++  l e ++p g++++Rla+y+ ++     ++      + l+  ++   + ++  aa++lf++++P+ +f+h +
  MDP0000235134 165 RHLLKAFGEAMEMGQRELEEVIMRCLAEKVNPLGQSLERLAFYLCQGVVDNQQG------DYLK--QE---SCKNFEAAFNLFYQIFPFGRFAHYA 249
                    7999999****************************************9988887......2222..22...356777899**************** PP

           GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvl.vakr 185
                    aN aIleav ++ e+vH++ fdi++G+Q   L+++ a+R++    l +T+++   ++       + + +et+++L++ A+++gv+++ + + +++ 
  MDP0000235134 250 ANTAILEAVPEDvETVHVVEFDIGEGVQXSQLIESVAKRNKT---LEVTAIKWDVEEsdeaapPQWRFKETKRQLQHHARSFGVNLKVEEIaIEDL 342
                    *********9999**************************765...9999998755555678899999**********************9933335 PP

           GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfdsleak 274
                    +++++  + r  ++E la n+++ l ++   +  ++    e+L+l k+l ++    ++++ + +  +++ n++sF   f   + +y al++sle++
  MDP0000235134 343 VSEIKKANKRGGRREFLAFNSMVGLPHMR--RRRSRGLLVEFLRLAKDLLANsargIITFGDGDacVKRgNDSSFNSSFDANVVHYKALLESLESS 436
                    5666666666667**************97..3444445789********87655669******9665668************************** PP

           GRAS 275 lpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpL 367
                    +p++  e+ri++E +++++ +++    e+ +   +  +l+ W      +G++  ++s ++ ++ak ++   +s g rv  e+ ++++l W++ pL
  MDP0000235134 437 FPTHLgEARIVMELMFVAPYVSSHAWFEKWNEAREGGNLQPW------FGLEGRRVSREMLMEAKEIVGADSSYGVRVGgENGNEMTLEWNSTPL 525
                    *999889************************88888899999......8*****************************967778888****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.925138511IPR005202Transcription factor GRAS
PfamPF035141.3E-38165525IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MMQSDMNFQT LWPYLNVTNS ALDTNEYTEQ MGSSEFSSIF MASDEFSETS FPFSTMFSGE  60
FKQLADCDNL LQVTSMAVEE FPIELGGFET NYLIGEIENM YASCLEGSEG SNTLPSQQFS  120
GEGNDVWSPN SFATSEASSV DVTSVQQSIT LPRDEMEIDN EVSIRHLLKA FGEAMEMGQR  180
ELEEVIMRCL AEKVNPLGQS LERLAFYLCQ GVVDNQQGDY LKQESCKNFE AAFNLFYQIF  240
PFGRFAHYAA NTAILEAVPE DVETVHVVEF DIGEGVQXSQ LIESVAKRNK TLEVTAIKWD  300
VEESDEAAPP QWRFKETKRQ LQHHARSFGV NLKVEEIAIE DLVSEIKKAN KRGGRREFLA  360
FNSMVGLPHM RRRRSRGLLV EFLRLAKDLL ANSARGIITF GDGDACVKRG NDSSFNSSFD  420
ANVVHYKALL ESLESSFPTH LGEARIVMEL MFVAPYVSSH AWFEKWNEAR EGGNLQPWFG  480
LEGRRVSREM LMEAKEIVGA DSSYGVRVGG ENGNEMTLEW NSTPL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.45011e-55fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008366906.20.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A498IE330.0A0A498IE33_MALDO; Uncharacterized protein
STRINGXP_008388867.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-13GRAS family protein