PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000235028
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 425aa    MW: 46010.8 Da    PI: 6.8956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000235028genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20210259255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  MDP0000235028 210 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 259
                    7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-14210259IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22210268IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-33210268IPR001471AP2/ERF domain
SMARTSM003802.3E-36210273IPR001471AP2/ERF domain
PROSITE profilePS5103225.712210267IPR001471AP2/ERF domain
PRINTSPR003671.2E-11211222IPR001471AP2/ERF domain
CDDcd000183.37E-15218269No hitNo description
PRINTSPR003671.2E-11233249IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MCLLKVANQR GSGGGGQYDR FDSPNDASDV DANINNINYG GGLELPPPYQ QQEGQQHVSP  60
STPTMFLGYS RSATEMSAMV SALTQVVSGQ RGSDSXGHIG SGGLLFLQVL LVLTIGSVKR  120
EGAXKIFASA SAQSQFMESG NRAFRGGYRD YRGTQSESSS GGATVTEETT NFATAPTTTT  180
ATVSATTAVP TTPSSAESVS FEETGERRRR YRGVRQRPWG KWAAEIRDPH KAARVWLGTF  240
DTAEAAARAY DEAALRFRGN RAKLNFPENV RLIQPPAAVQ TFNSNSRPTQ SAQPLQPPPP  300
PPQPPQQQLY HSQQAFHPSS DLIRDYFDYS QLLQNSADSN LLEHMYYYNS QLVSLQSSLL  360
QPTTSSTPSS ALPSSASSSS FPLFFSEQNQ QQGFFRQPQD PNQGGSSDFQ APSWSHSGNN  420
PSSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-23209270163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210ERRRRY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.236280.0flower| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324560.0GU732456.1 Malus x domestica AP2 domain class transcription factor (AP2D32) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315920.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLD5L1160.0D5L116_MALDO; AP2 domain class transcription factor
STRINGXP_008381850.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.13e-17ERF family protein