PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000234911
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 142aa    MW: 15805.5 Da    PI: 11.2723
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000234911genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.46.9e-2789138251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                    ri+n++ rqvtfskRr g+lKKA+EL +LCdaev v+ifsstgkly+++s
  MDP0000234911  89 RIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVMIFSSTGKLYDFAS 138
                    8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.1680140IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-3980139IPR002100Transcription factor, MADS-box
CDDcd002651.14E-3581139No hitNo description
SuperFamilySSF554551.28E-2681139IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-2882102IPR002100Transcription factor, MADS-box
PROSITE patternPS00350082136IPR002100Transcription factor, MADS-box
PfamPF003198.3E-2589136IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-28102117IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-28117138IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MTAPTCKFRE HSHRGHHGHS KTLLGQLCLL NVYSSNVSRH LKKEKIPKNR IPAKAILGET  60
SVCLHSLKAV APSLRTRSSM GRGKIVIRRI DNSTSRQVTF SKRRSGLLKK AKELAILCDA  120
EVGVMIFSST GKLYDFASTR SY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-1880139160MEF2C
5f28_B1e-1880139160MEF2C
5f28_C1e-1880139160MEF2C
5f28_D1e-1880139160MEF2C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1447575e-46BT144757.1 Lotus japonicus clone JCVI-FLLj-15G19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498HV138e-96A0A498HV13_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.11e-35AGAMOUS-like 44