PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000233477
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 585aa    MW: 61875.3 Da    PI: 9.0708
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000233477genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05126148123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  MDP0000233477 126 FVCEICSKGFQRDQNLQLHRRGH 148
                    89*******************88 PP
2zf-C2H2110.0014202224123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H + +
  MDP0000233477 202 WKCDKCSKKYAVQSDWKAHSKIC 224
                    58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.2E-5125148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.53E-7125148No hitNo description
SMARTSM003550.036126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887126148IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
SMARTSM00355240167197IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.7E-4190223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.53E-7197222No hitNo description
SMARTSM00355150202222IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MQVNQYITLN FWERDPATCS PFNPTCRGTQ LVSPRVSFGQ RPIRTELVDW KFKKIKEEKI  60
KISALMPTDL DNSSTASGEA SVSSSGNQTA PPKPATKKKR NLPGMPDPDA EVIALSPKTL  120
MATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRSGK EVKKRVYVCP EASCVHHDPS  180
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRR  240
DSFITHRAFC DALAEESAKA HTPTATAAAA TAVNLNSESD PKTQSANSPP QAPPPPPQAA  300
APPQPTTSSV PSVSAGVLSS SLPAQSTVRE LPENPTQIVE EAQVVAGRKG NRSSSSSSSS  360
NGSTSSGVFA SLFTSSTASA SLQPPQQPAF TDLIRAMGHP DQSNDLAPSS SMEPISLGLS  420
TSHGSSIFES AGHERRQYAP PPQPAMSATA LLQKAAQMGP AETNASLLRG FGIMSSASSS  480
AQQETMQWNX GPAEPDNAAV AAGLGLGLPC DGGSGWKELM MGSPSMFGPK QTTLDLLGLG  540
MAAGNNPSSG LSALITSISG GLDVAAAAAS YGGGEYSGKD LARSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34198259364Zinc finger protein JACKDAW
5b3h_F1e-34198259364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.98540.0flower| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8601176e-86JQ860117.1 Pyrus pyrifolia ENY mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338682.20.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A498KLL20.0A0A498KLL2_MALDO; Uncharacterized protein
STRINGXP_008338682.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-105C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]