PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000233303 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 256aa MW: 27707.7 Da PI: 7.6967 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.1 | 1.2e-27 | 29 | 132 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++C ++p++ ++q++++ +++k++G++ +l+l++a ++ r+++++sl+yeA+ r+ +P yG+vg+++++ + +q++ MDP0000233303 29 SCNGCRVLRKGCSDECEIRPCIewiksSESQANATLFLAKFYGRAGLLNLINAGSPALRPAIFKSLLYEACGRIVNPTYGSVGLMWSGGWXQCQAA 124 6*********************9999778899**************************************************************** PP DUF260 92 aelallke 99 ++++l ++ MDP0000233303 125 VDAVLEGS 132 99887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.463 | 28 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-21 | 29 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MPEMPLTNSV KYTSNLLHSH CSLERMRMSC NGCRVLRKGC SDECEIRPCI EWIKSSESQA 60 NATLFLAKFY GRAGLLNLIN AGSPALRPAI FKSLLYEACG RIVNPTYGSV GLMWSGGWXQ 120 CQAAVDAVLE GSPIIGIDAD VLKRNTNPNL DPPHKSGDIR HVSRDPTSGX SSHNKATTRN 180 KLKRXMNRPK IQPESATGSN TKSLAQLCNV PDPDDLYPIP QGNGSSGDQQ AADDQDGEVG 240 LELTLGLGLP PLTHLN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008339675.2 | 1e-168 | LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 6e-71 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A498HJT5 | 0.0 | A0A498HJT5_MALDO; Uncharacterized protein | ||||
STRING | XP_008339675.1 | 1e-168 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 3e-73 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000233303 |