PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000233216

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 731aa MW: 83637 Da PI: 6.6761

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000233216	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.6	1.3e-20	53	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnHel MDP0000233216 53 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNHELL 146 6*************9998874556679***************9***************98887676789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-17	53	146	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.1E-23	269	361	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.681	533	581	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.0E-6	555	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-5	556	583	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MSEGTSLGME DLSQDDIGTI EETAEDTILS RQTSVNLVPF VGQRFVSQEA AYEFYCSFAK 60 QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPSE DGKMQRNRKS SRCGCQAYMR 120 IVKRADFDVP EWRVTGFSNI HNHELLKSNE VRLLPAYCSM STDDKSRICM FAKAGMSVRQ 180 MLRLMEMEKG VKLGCLPFTE IDVRNLLQSF RNVNRDTDAI DLIAMCKKMK DESPNFKYEF 240 KIDGHNRLEH IAWSYSSSVQ LYEEFGDSVV FDTTHXLDAY DMLLGIWLGV DNHGMTCFFG 300 CALLRDENMQ SFSWALKTFL GFMKGKAPQT MLTDHNMWLK EAVAIEMPRS KHAFCIWHIV 360 AKFSDWFSVL LGPRYDDWKA EFHQLFNLDL VEDFEDRWRE MVNEYGLQAN KHVISLYALR 420 NFWALAYLRN YFFAGIMSTS QSESINAFIQ RFLSAQSQLD RFVEQAADVV DYNDRVGVKQ 480 KIERKLQRVC LKTGSPIESH AASVLTPYAF GKLQEELVSA PQYASLAVDE GCFQVRHHTE 540 ADGGCKVVWI PCQEHISCTC YQFEFSGILC RHVLRVLSTN NCFHIPDQYL PTRWCSVSSS 600 STNTFETATI ADNSEKIQLL ESMASTLITE SVETEERLDA ACEQIAMVLS RIKDLPRTTH 660 NAIDIAYNCP SDSLILPDVE DHGDGIIRFR IGNSHESVTL GKLKERRPRD MVEISKKRRH 720 CSGPCCLSVQ Q

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MSEGTSLGME DLSQDDIGTI EETAEDTILS RQTSVNLVPF VGQRFVSQEA AYEFYCSFAK  60
QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPSE DGKMQRNRKS SRCGCQAYMR  120
IVKRADFDVP EWRVTGFSNI HNHELLKSNE VRLLPAYCSM STDDKSRICM FAKAGMSVRQ  180
MLRLMEMEKG VKLGCLPFTE IDVRNLLQSF RNVNRDTDAI DLIAMCKKMK DESPNFKYEF  240
KIDGHNRLEH IAWSYSSSVQ LYEEFGDSVV FDTTHXLDAY DMLLGIWLGV DNHGMTCFFG  300
CALLRDENMQ SFSWALKTFL GFMKGKAPQT MLTDHNMWLK EAVAIEMPRS KHAFCIWHIV  360
AKFSDWFSVL LGPRYDDWKA EFHQLFNLDL VEDFEDRWRE MVNEYGLQAN KHVISLYALR  420
NFWALAYLRN YFFAGIMSTS QSESINAFIQ RFLSAQSQLD RFVEQAADVV DYNDRVGVKQ  480
KIERKLQRVC LKTGSPIESH AASVLTPYAF GKLQEELVSA PQYASLAVDE GCFQVRHHTE  540
ADGGCKVVWI PCQEHISCTC YQFEFSGILC RHVLRVLSTN NCFHIPDQYL PTRWCSVSSS  600
STNTFETATI ADNSEKIQLL ESMASTLITE SVETEERLDA ACEQIAMVLS RIKDLPRTTH  660
NAIDIAYNCP SDSLILPDVE DHGDGIIRFR IGNSHESVTL GKLKERRPRD MVEISKKRRH  720
CSGPCCLSVQ Q

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009347773.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_009347774.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A251QWJ8	0.0	A0A251QWJ8_PRUPE; Uncharacterized protein
STRING	XP_008390558.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	MDP0000233216

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]