PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000230747

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YC

Protein Properties

Length: 325aa MW: 35376 Da PI: 4.8997

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000230747	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.3	2e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r MDP0000230747 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDIVSR 86 5789**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.9E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.92E-20	4	89	IPR009072	Histone-fold
Pfam	PF00808	2.7E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSLHLKHC VQSYNVFDFL RDIVSRVPDY GHGHSDAATD DRTISKRRKP PGDECNDSDE 120 ELKRSKMLEI NHGSSSGRGR GRGRGRGRGR GRXAEREISH HETESEPCTS LQQTIIPNPN 180 PGMVADDVSE SKDVLRENVT VPDETDPAVR NFDLNADVND NEDTKAAARA AQAGAMASQA 240 APVASQAAPM AAQAGAMASQ AAPEASQAAP MAAQASSAGP ISEPKHEEYP GWSLADVDRM 300 AIDPLQLANL SRRLDEDEED YDEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	9e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	150	RGRGRGRGRG
2	141	151	RGRGRGRGRGR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.11318	0.0	bud\| leaf\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008346600.2	0.0	dr1-associated corepressor-like
TrEMBL	A0A498KIA3	0.0	A0A498KIA3_MALDO; Uncharacterized protein
STRING	XP_008346600.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	6e-75	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	MDP0000230747