PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000230601

Common Name

MYBR9

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 300aa MW: 32679.1 Da PI: 7.1384

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000230601	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.7e-14	90	134	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky MDP0000230601 90 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 134 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.836	83	139	IPR017930	Myb domain
SuperFamily	SSF46689	4.41E-17	85	140	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-17	86	137	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	87	137	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-11	89	134	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-11	90	134	IPR001005	SANT/Myb domain
CDD	cd00167	1.68E-9	90	135	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSSGTCSTVE PAGAGEFMLF GVRVVVDSMR KSVSLNNLSQ YEQPQEAASN NGNNGTAAGK 60 DDAAPGYASE NDVVHNSGGN RERERKRGVP WTEEEHKLFL LGLQKVGKGD WRGISRNFVK 120 TRTPTQVASH AQKYFLRRNN HNRRRRRSSL FDITTETVSP TPMDEEQVHL QDNASQSHPL 180 PPPPLSDPRN ASGFPVVPDF PMTVGXAALP VPIENPTENL ALRQANHENS TLPKLVHPAA 240 LHSAPHAAAM SDLNLNSTMD PSTLTLNLSL SMESREPSSR HSAFQTMSGF SNGDSMISVT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.11980	0.0	bud\| cell culture\| fruit\| leaf\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY196776	0.0	AY196776.1 Malus xiaojinensis transcription factor Myb1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001281003.1	0.0	transcription factor MYB1R1-like
Swissprot	Q2V9B0	1e-74	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	D9ZJ86	0.0	D9ZJ86_MALDO; MYBR domain class transcription factor
STRING	XP_008374494.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	2e-57	MYB_related family protein

Link Out ? help Back to Top
Phytozome	MDP0000230601
Entrez Gene	103437771

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]