PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000229036
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 391aa    MW: 42037.3 Da    PI: 6.8922
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000229036genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-19190239255
            AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae Aa+ +++a+++++g
  MDP0000229036 190 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFETAEAAAQSYDQAALRFRG 239
                    7********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-12190239IPR001471AP2/ERF domain
PROSITE profilePS5103225.093190247IPR001471AP2/ERF domain
SMARTSM003801.1E-34190253IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-21190248IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-31190248IPR001471AP2/ERF domain
PRINTSPR003679.1E-11191202IPR001471AP2/ERF domain
CDDcd000189.36E-25198249No hitNo description
PRINTSPR003679.1E-11213229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MCVLKVANSR GNNDQRAARR TNIEEGQGGH HNIGEWLNEP PLISHQQRQR AGGGGSGILA  60
SAASSMLLXL DREREMSAMV SALTHVVAGD ENEVAAAGVN SDSRTSSWGS VGTKRRREEE  120
EEGGGGGGPL SESVTRLCRA FDEFPXHILG PSSAFGEGLX TRTTTTAIPP TPSXXYVYSA  180
PEIAEPIRRR YRGVRQRPWG KWAAEIRDPF KAARVWLGTF ETAEAAAQSY DQAALRFRGN  240
KAKLNFPENV RLLSSTAVPP PTQLSNSAPQ NTLLSVATSS EPIVHSQAFH SSDEVPSTSR  300
NLVSYSELVD MQRQPMSIYD QMVLSSSAVA EAAASSSSSS SSLSPPPLSS LFGARSWLPV  360
GPSVSDNSTS TADFPMQQWS SYAQYTTPSS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22189250466ATERF1
3gcc_A1e-22189250466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950710.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A498I0G10.0A0A498I0G1_MALDO; Uncharacterized protein
STRINGXP_008353572.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-28ethylene response factor 110