PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000228483
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 527aa    MW: 59593.1 Da    PI: 4.5319
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000228483genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS135.46e-421575242374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL ++ ea++ g+ el + ++  l e ++p g++++R+a+ + ++     +r      + l+  ++   + ++  aa++lf++++P+ +f+h +
  MDP0000228483 157 HHLLKAFGEAMEMGQRELGKVIMRCLAEKVNPLGQSLERVAFNLCQGVVDNQHR------DYLK--QE---SCKNFEAAFNLFYQIFPFGRFAHYA 241
                    58889999**************************************99988888......2222..22...356777899**************** PP

           GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrl 186
                    aN aIl+a+ ++ e+vH++ fdi++G+Q   L++a a+R++    l++T+++    +       + + eet+++L++ A+++g++++ + +   ++
  MDP0000228483 242 ANTAILKAIPEDvETVHVVEFDIGEGVQLSQLIEAVAKRNKT---LKVTAIKWDVDErdevapPQWRFEETKRQLQHHARSFGLNLKVEEI---TI 331
                    *********9998**************************765...******986555678899999***********************99...55 PP

           GRAS 187 edleleeL.rvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe.adh..nsesFlerflealeyysalfds 270
                    edl ++e+ +v++    +E +a n ++ l ++   +  ++    e+L+lvk+l ++    ++++ + + + +  n++sF   f   + +y al++s
  MDP0000228483 332 EDL-VSEIkKVNKrggrREFIAFNTMVGLPHMR--RRRSRGLVMEFLRLVKNLLANsargIITFGDGDaCALrgNDSSFSSFFDTNVVHYKALLES 424
                    555.3333123324466*************997..333444568*********87655669******9633347********************** PP

           GRAS 271 leaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkd 364
                    le+++p++  e+r+++E  ++++ +++     + +   + ++l++W      +G++  ++s ++ ++ak ++   +s g r+  e+ +++ l W++
  MDP0000228483 425 LESTFPSHLgEARMVMELLFVAPYVSSQAWLDKWNEAREGRNLQSW------FGLEGRRVSGEMLTEAKEMVGADSSYGVRIGgENANEMALEWNG 514
                    ******9998999999999999999998888888866666667777......8*****************************978899999***** PP

           GRAS 365 rpLvsvSaWr 374
                     pLv+v  W+
  MDP0000228483 515 IPLVTVETWT 524
                    ******9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.335130503IPR005202Transcription factor GRAS
PfamPF035142.1E-39157524IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MMQPGMFQTL WPYLNVTNSP SDTNEYTDQM GSSEFSSIFM ASDEFSETSF PFSTMFSGEF  60
EQVADSDHLL QVYSTEVEEF PMELGGFEPN YLIGEIENMY ASCLESSEGS TLPSQQFSVE  120
GNDAWSPNSF VTSETSVQQS ITLPIDEMEI DNKVSIHHLL KAFGEAMEMG QRELGKVIMR  180
CLAEKVNPLG QSLERVAFNL CQGVVDNQHR DYLKQESCKN FEAAFNLFYQ IFPFGRFAHY  240
AANTAILKAI PEDVETVHVV EFDIGEGVQL SQLIEAVAKR NKTLKVTAIK WDVDERDEVA  300
PPQWRFEETK RQLQHHARSF GLNLKVEEIT IEDLVSEIKK VNKRGGRREF IAFNTMVGLP  360
HMRRRRSRGL VMEFLRLVKN LLANSARGII TFGDGDACAL RGNDSSFSSF FDTNVVHYKA  420
LLESLESTFP SHLGEARMVM ELLFVAPYVS SQAWLDKWNE AREGRNLQSW FGLEGRRVSG  480
EMLTEAKEMV GADSSYGVRI GGENANEMAL EWNGIPLVTV ETWTNQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-1323352388374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008370545.10.0scarecrow-like protein 26
TrEMBLA0A498K1N20.0A0A498K1N2_MALDO; Uncharacterized protein
STRINGXP_008370545.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-19GRAS family protein