PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000228375

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 289aa MW: 32614.5 Da PI: 7.5157

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000228375	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	8.1e-06	120	139	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ MDP0000228375 120 FSCHVCFKTFNRYNNLQMHM 139 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.1E-5	115	142	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.3E-4	120	139	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.055	120	147	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	122	142	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.54E-5	186	224	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEPFEISSSS SPLFSSNHNL ETLNLFPSEI PNANLEPLPP ISCLLRSPDQ VPNSHVDNLK 60 AICSEDHKED GVTVALHIGX PDCSDGSMSY LTDPKDDEDN VTAQYWIPTP EQILIGFAHF 120 SCHVCFKTFN RYNNLQMHMW GHGSQYRRGP ESLKGTXPRT MFGIPCYCCA EGCKNNIDHP 180 RAKPLKDFRT LQTHYKRKHG MKPFMCRKCG KLLAVKGDWR THEKNCGKRW LCVCGSDFKH 240 KRSLKDHIKA FGSGHSHIPP NSFDELRDLD EDISPTTSLF KGMPSDAAS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Developing ovules and young seeds. {ECO:0000269\|PubMed:11782451}.
Uniprot	TISSUE SPECIFICITY: Restricted to the endothelium, the innermost cell layer of the seed coat and detected to a lesser extent in the other cell layers of the testa. {ECO:0000269\|PubMed:11782451}.

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX580083	6e-35	JX580083.1 Gossypium hirsutum clone NBRI_GE12445 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009374106.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	1e-107	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A498HWP1	0.0	A0A498HWP1_MALDO; Uncharacterized protein
STRING	XP_008379354.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-109	C2H2 family protein

Link Out ? help Back to Top
Phytozome	MDP0000228375

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]