PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000225886

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 273aa MW: 31761.5 Da PI: 8.7947

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000225886	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	107	130	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+ksF+ + L +H + H MDP0000225886 107 WQCGYCKKSFRAEMFLDQHFDNrH 130 58***********99999976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	109	130	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MKKTNLFVSI LLFLSFSVLQ VSSLTQTNQD FEKSESSRTL EQGQEHAHEV HCSRERSRAA 60 WQIIEKYLMP FVEHEHYEIP SNCRLHPDND LFRDQEEHKI HLDINEWQCG YCKKSFRAEM 120 FLDQHFDNRH YNLLNVSGSK CLADLCGALH CDAVMNTKLS KTKCNPASVA RNHHLCEGLA 180 NSCFPINQSP SARRLNEFFL HQFCHAHTCS GKRKLFPRGG KKHISVFYLA ISILTLMLLP 240 IFYLIVYLHQ REMRKGTQEL RRISKVGQKT KPS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.22046	0.0	fruit\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008361020.1	0.0	uncharacterized protein LOC103424702 isoform X1
TrEMBL	A0A498JKM4	0.0	A0A498JKM4_MALDO; Uncharacterized protein
STRING	XP_008361020.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3216	13	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-124	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	MDP0000225886