PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000225179
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 681aa    MW: 74375.2 Da    PI: 6.6693
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000225179genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.11.7e-27344398156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++
  MDP0000225179 344 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 398
                    5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.765341400IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-26342401IPR009057Homeodomain-like
SuperFamilySSF466896.99E-18343401IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-26344398IPR006447Myb domain, plants
PfamPF002498.4E-8347396IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAESEATSKN QLQSEEHREM ICIKGVAILV GAPWLSTVVK YGRWGPKSRG EEGWVGGVEE  60
GGGMVDVRGV EEERKVGWVG AEERRKEEGR KGGEGELLRW SSTYWLAVNP RGNNCLMLIL  120
SPLREGHHHH QLKDEKQLGD DGDVESSFAF NGGNNAVLDF PEFSGGMGMG SLLDSIDFDD  180
FFIGIHDGDV LPDLEMDSEI LDFSISAPAG DTNTTTTTPS KEEEEVADGY YNTAKTTTTL  240
SKVEEPEEED MQGHDEVAAA AVGITSTNNN SGLNQNYSSS STTTTPTPDH RVDQEIASKR  300
YDTNEIRAAH RPSSGSTRRE SADQKLATKS SSTVQSKNSH GRRKVKVDWT PELHRRFVQA  360
VEQLGVDKAV PSRILELMGI DCLTRHNIAS HLQKYRSHRK HLLAREADAA SWTQRRQMYG  420
AAAAAGGGAG AKSRRDVMMM NSPNWLNAPT MGFPPITSTT PPPMHHAQHH HQLTGPLHVW  480
GHPTMDQSMM XMCPPKHHLP HHFPSPVLPP PPTAPAHTWP PPLPSPPDAS YWHHPHSHHQ  540
RNHIWGKYGW EGVGQVWVGM MGGGCRGGAA AVPDGLTPGT PCFPRQLAAP TRFPAPPVPG  600
IPPHAMYKVD HAGIAVPTPP QSGPHPRLDF HPSKESIDAA IGDVLSKPWL PLPLGLRPPT  660
TDTVMVELQR QGVPKIPLSC A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-16341396257ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008381584.20.0probable transcription factor GLK1
TrEMBLA0A498J8B30.0A0A498J8B3_MALDO; Uncharacterized protein
STRINGXP_008381584.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42423461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.18e-62GBF's pro-rich region-interacting factor 1