PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000225159
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 362aa    MW: 40006.3 Da    PI: 6.3726
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000225159genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.7e-09186233455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k    a +L + ++Y++sLq
  MDP0000225159 186 SHSLAERVRRQKISERMKMLQRLVPGC----DKITGRAVMLDEIINYVQSLQ 233
                    8*************************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-16180249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-10180237No hitNo description
PROSITE profilePS5088815.129182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-16182248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6186233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAAFSYQNLH HLSLLDSIFL PNAPTTNSIN TDSXFSQSFY PSEPLTQEIQ ADNNSRAVES  60
SCTMDHSSTK VAFSDNENDP SVTKNKSTES STVVDVDRIE IGDQVTQKVT PMGKKRKSST  120
GSSFNSAQSK GTKEQKGKKQ KKIDGGTKKD EEKKIKSDEE DQVKVREGPP TGYIHVRARR  180
GQATDSHSLA ERVRRQKISE RMKMLQRLVP GCDKITGRAV MLDEIINYVQ SLQNQVEFLS  240
VKLDSLNPMF YDFGIDIGAL VVKPERLCST ESPYQSVPQC NPTQPTPFAD TSTNITATTA  300
VAAAAATTNN NCPFLDSSAS LLLQRPNTFF QDGESLLWDV EDQRQSFLNP SGFSNSNLCS  360
FN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.264120.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959633.10.0LOW QUALITY PROTEIN: transcription factor bHLH137
TrEMBLA0A498JQT10.0A0A498JQT1_MALDO; Uncharacterized protein
STRINGXP_008374189.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-54bHLH family protein