 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MDP0000224892 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
| Family |
C2H2 |
| Protein Properties |
Length: 442aa MW: 49739.2 Da PI: 9.1135 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000224892 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22.1 | 3.8e-07 | 266 | 288 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
MDP0000224892 266 HYCQVCGKGFKRDANLRMHMRAH 288
68*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 442 aa
Download sequence Send
to blast |
MGLPINYLHH ALSRQFMKAD WRRRKTKRMM SGAPSNCFQT MLQQQQHHLG LQIYEDPHQV 60
SSFSLEPNSS SSSVPDNHST SLLCNFSVLK EKVHQAKSLV SILISPNHHQ SQPQESATIA 120
LASMSNIIQE IIVTASSMMF TCQQMALVST TTPGNNINNT NTSTTTTGQC LSNPSDHREH 180
NRLSETNFGG GHGNKIDQSG FYSTREQTLD WFNDSYNDCT TADTSTRIVN QIGNNDKHVQ 240
GKELPVSSNY DIIELDASDL LAKYTHYCQV CGKGFKRDAN LRMHMRAHGD EYKTIVALSN 300
PMKKTNNNND SAGGIDGNMA CSTKLPRKYS CPQEGCRWNQ KHAKFQPLKS MICVKNHYKR 360
SHCPKMYVCK RCNRKQFSVL SDLRTHEKHC GDLRWQCSCG TTFSRKDKLM GHVALFTGHT 420
PVMITSLTRI GKVDQQSHGS QM
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
