PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000222672

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 342aa MW: 36672.5 Da PI: 9.5135

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000222672	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H MDP0000222672 148 FTCNFCKRDFSTSQALGGHQNAH 170 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.88E-6	145	175	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.5E-4	146	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.4E-4	147	172	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.448	148	175	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	150	170	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MAEEHQSPSE ASNISGASDG TPPPKKDSPP PPPPPDLPDQ KMKMKMKEKI IIDDSDDEQP 60 QPKLKKPPPA AGSSSSLTPS SRALLDLKLS NNDPGHASGS SNELVLFNPL NQGSSLNPGG 120 LGLLSQHNEP RSESPRGXDG RKPRTRVFTC NFCKRDFSTS QALGGHQNAH KQERALAKRR 180 QGGIGMDNLF GHSYRYYSPY LSITQHPLYG SYGRSLGVRM DSMIHKPSYP WSASTSGFGR 240 FGHGIGAGGW SSSRPGGLIN NFQSSIDRLN LHGVHANTTP SGTLGIPGTS SASRFDQEIG 300 SSRNFGGSNF GINRPIIADD VLRHEPLEPV TDASGLDLSL KL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MAEEHQSPSE ASNISGASDG TPPPKKDSPP PPPPPDLPDQ KMKMKMKEKI IIDDSDDEQP  60
QPKLKKPPPA AGSSSSLTPS SRALLDLKLS NNDPGHASGS SNELVLFNPL NQGSSLNPGG  120
LGLLSQHNEP RSESPRGXDG RKPRTRVFTC NFCKRDFSTS QALGGHQNAH KQERALAKRR  180
QGGIGMDNLF GHSYRYYSPY LSITQHPLYG SYGRSLGVRM DSMIHKPSYP WSASTSGFGR  240
FGHGIGAGGW SSSRPGGLIN NFQSSIDRLN LHGVHANTTP SGTLGIPGTS SASRFDQEIG  300
SSRNFGGSNF GINRPIIADD VLRHEPLEPV TDASGLDLSL KL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008347009.2	0.0	uncharacterized protein LOC103410014
TrEMBL	A0A498JIM9	0.0	A0A498JIM9_MALDO; Uncharacterized protein
STRING	XP_008347009.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	9e-19	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	MDP0000222672