PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000218344
Common NameDREB6-1
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 450aa    MW: 50391.9 Da    PI: 7.4227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000218344genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19208258256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  MDP0000218344 208 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 258
                    59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.57E-34207267No hitNo description
PROSITE profilePS5103222.998208265IPR001471AP2/ERF domain
SMARTSM003801.5E-40208271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-32208266IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23208266IPR016177DNA-binding domain
PfamPF008472.6E-12209258IPR001471AP2/ERF domain
PRINTSPR003678.0E-11209220IPR001471AP2/ERF domain
PRINTSPR003678.0E-11231247IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSSPKKSGKS KMETSGEWEA NKDKEXDFSF ERPPWKPGFS EASTASNRPL KKVKSPERQD  60
PIQASPSLDH HQTPSPIIAP HPSSSSSKIV FPFSFDGSQQ PMMQFXHQFN PTNLPMFPSP  120
IQQQLQQNPQ QMISFESQQQ QXQQQQGMSY PPPFVGESVS WQQHQKMLQH WSDALNLSPR  180
GRVMMNRLGP DGRPMFRPPA MPYNTTKLYR GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT  240
AEDAAMAYDR EAFKLRGENA RLNFPELFLN KDKSDVSVSS APSSAATSPP RHEGSKPTRN  300
RKQPQKIKSS ASNIEAMPPP PIPHTQEENS TDNYSGLESN EAKAIDEVEV NIDGAGGGSS  360
QQKEIVWGDM AEDWLNAIPA GWGPGSPVWD DLDNNLLLQS HLPFTNPNQQ DYNININPQQ  420
AIQNSGSGSG SGSSSSSSXP TKNLFWKDQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20207265160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6698220.0JQ669822.1 Malus x domestica dehydration-responsive element-binding protein (DREB6) (DREB6-1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008381261.20.0ethylene-responsive transcription factor ERF054
TrEMBLA0A1P8VHX00.0A0A1P8VHX0_9ROSA; DREB6.10
STRINGXP_008381261.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.14e-54ERF family protein
Publications ? help Back to Top
  1. Zhao T,Liang D,Wang P,Liu J,Ma F
    Genome-wide analysis and expression profiling of the DREB transcription factor gene family in Malus under abiotic stress.
    Mol. Genet. Genomics, 2012. 287(5): p. 423-36
    [PMID:22526429]