PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000218116

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C3H

Protein Properties

Length: 377aa MW: 42510.7 Da PI: 9.4872

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000218116	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.3	6.4e-09	132	155	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++Cr f+r GtC+yGd+C+F H+ MDP0000218116 132 VRICRSFFRWGTCSYGDKCRFRHV 155 799******************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	9.8E-12	69	101	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.59E-7	69	101	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.474	71	98	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.41	71	97	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.723	129	157	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.0E-4	129	156	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-6	131	155	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-6	132	158	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.7E-7	133	155	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MSTPLPTRQF FAQYLESGDN GRQIKHQIPT EEKEIEAQSD IKAQAFKKPR TSEAVSNLNA 60 ASGQNKMLPS YYKTQLCRKF QMXCCSSGQR CSFAHGXSDL RRTLRDAQGM ETEKGNLARR 120 TWNGDHGSSN GVRICRSFFR WGTCSYGDKC RFRHVNPENI RXSSFISIST AGGSAQFDCK 180 KSLELRKLCG YTTLESGSVQ ANSLTTYTRG NNASNRRMGV ATAYKQGQST HCNLEWNELE 240 KMSRIYADWI EDMPLLHGPP SKASGHAIGN RYSMFVSLEL ALDGKNHSNV VDISSLKNMK 300 HVHILHILEY PNLDEFAIYC AELARKVPQM SMMTIHVCFL GLQFVQDAKI FGEECPALKK 360 LPLKRGLKHS TTLGRQW

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MSTPLPTRQF FAQYLESGDN GRQIKHQIPT EEKEIEAQSD IKAQAFKKPR TSEAVSNLNA  60
ASGQNKMLPS YYKTQLCRKF QMXCCSSGQR CSFAHGXSDL RRTLRDAQGM ETEKGNLARR  120
TWNGDHGSSN GVRICRSFFR WGTCSYGDKC RFRHVNPENI RXSSFISIST AGGSAQFDCK  180
KSLELRKLCG YTTLESGSVQ ANSLTTYTRG NNASNRRMGV ATAYKQGQST HCNLEWNELE  240
KMSRIYADWI EDMPLLHGPP SKASGHAIGN RYSMFVSLEL ALDGKNHSNV VDISSLKNMK  300
HVHILHILEY PNLDEFAIYC AELARKVPQM SMMTIHVCFL GLQFVQDAKI FGEECPALKK  360
LPLKRGLKHS TTLGRQW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017189150.2	0.0	zinc finger CCCH domain-containing protein 39-like
TrEMBL	A0A498HJ71	0.0	A0A498HJ71_MALDO; Uncharacterized protein
STRING	XP_009362553.1	1e-180	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15275	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	2e-11	C3H family protein

Link Out ? help Back to Top
Phytozome	MDP0000218116