PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000218020
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 299aa    MW: 34761.3 Da    PI: 9.2856
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000218020genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.4e-29959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krienk+nrqvtfskR  g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  MDP0000218020  9 KRIENKINRQVTFSKRTSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59
                   79***********************************************96 PP
2K-box99.16.2e-3311219814100
          K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      +++ e+akLk+++e Lqr+q h++GedL+ Ls++eLq+LeqqL+++l++iRs+Kn++++e+i+elqkk k+lqe+n+ L k+++e
  MDP0000218020 112 KGNWTLEHAKLKARVEVLQRNQSHYMGEDLQILSFQELQNLEQQLDSALRRIRSRKNQVMYESISELQKKDKALQEQNNLLAKNVKE 198
                    5699******************************************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.581161IPR002100Transcription factor, MADS-box
SMARTSM004328.4E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.65E-34262No hitNo description
SuperFamilySSF554554.32E-28270IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-30323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.165112202IPR002487Transcription factor, K-box
PfamPF014861.5E-27113196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRTSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD  60
SCCSLRDQCT TGKGERQTGY SAGVCVRERE MEREREYIIL RIYVKHGKDP GKGNWTLEHA  120
KLKARVEVLQ RNQSHYMGED LQILSFQELQ NLEQQLDSAL RRIRSRKNQV MYESISELQK  180
KDKALQEQNN LLAKNVKEKE KAVTSQAQLE HAQKQSLDSS STLLPQELQY LNFRYEESMV  240
ERRRGEEERM YKECRSNYHQ AIRSSNGISG DNQQDGDETA TPHRPNTLLP PWMLRHLNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18160161MEF2C
5f28_B2e-18160161MEF2C
5f28_C2e-18160161MEF2C
5f28_D2e-18160161MEF2C
6byy_A2e-18160161MEF2 CHIMERA
6byy_B2e-18160161MEF2 CHIMERA
6byy_C2e-18160161MEF2 CHIMERA
6byy_D2e-18160161MEF2 CHIMERA
6bz1_A2e-18160161MEF2 CHIMERA
6bz1_B2e-18160161MEF2 CHIMERA
6bz1_C2e-18160161MEF2 CHIMERA
6bz1_D2e-18160161MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29401e-137bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of tuberization. {ECO:0000269|PubMed:8756601}.
UniprotTISSUE SPECIFICITY: Abundant in vegetative organs. {ECO:0000269|PubMed:8543185}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6231651e-141AB623165.2 Pyrus pyrifolia var. culta PpMADS3-1 mRNA for MASDS-box protein, complete cds.
GenBankKP1640011e-141KP164001.1 Pyrus pyrifolia clone PpAP1-2 AP1 MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374663.11e-158truncated transcription factor CAULIFLOWER A isoform X1
SwissprotQ424292e-89AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLQ283Q21e-156Q283Q2_MALDO; MdMads2.2 protein
STRINGXP_008374663.11e-157(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-81AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]