PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000216861
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 296aa    MW: 32943.1 Da    PI: 10.1054
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000216861genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind60.44.6e-19226291260
                    HHHHHHHHHCTG.......GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
   HSF_DNA-bind   2 Flkklyeilede.......elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                    Fl k++++le++         ++++sw+ +g+ f+v+ + +f++ +L kyFkh+nf+SF+RQLn+Y
  MDP0000216861 226 FLLKTFDLLEEQdvggddgGKRNTVSWNVEGTGFIVWSPADFSELLLXKYFKHNNFSSFIRQLNTY 291
                    999*******55555555599********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-19216292IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-6222295IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.4E-15226291IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-13226291IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-5271283IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-5284296IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAQVVFDRDP PVTNHSDNPN KPNFGISSCI LPSRIVRAAP YTHPKRKRKK NSGYRLMLEI  60
VAEPINVRSM VHYEGAGKLN EVKTPSVTXS ASATTNVKPP KATSSYFKVF SDPSSSWPPA  120
PGLAFLLPHN THPPSPRSCL PRTSPLSPSP KPSALLPPLS ESLRCVAWGL ERVAWSLHLL  180
YVLYQSLSLC ENGGQKRNSL ETKVSKASYQ PYMAETSSRT RNAALFLLKT FDLLEEQDVG  240
GDDGGKRNTV SWNVEGTGFI VWSPADFSEL LLXKYFKHNN FSSFIRQLNT YVRREA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14350PKRKRKKN
24549RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-19heat shock transcription factor B2A