PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000216605
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 339aa    MW: 37719.4 Da    PI: 10.4652
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000216605genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.21e-131812211151
                    HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                    v+ s  ++ ++KK +ELSvLCda + ++ifsstgk++ y++
  MDP0000216605 181 VSTSSYLAXLIKKTHELSVLCDAXIXLVIFSSTGKMFRYCN 221
                    5666667889****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1035065.49E-5541IPR023395Mitochondrial carrier domain
Gene3DG3DSA:1.50.40.104.7E-6744IPR023395Mitochondrial carrier domain
PfamPF001536.7E-6747IPR018108Mitochondrial substrate/solute carrier
PROSITE profilePS5006614.311163223IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-5164222IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-9185200IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-11188223IPR002100Transcription factor, MADS-box
PfamPF003195.3E-10189219IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-9200221IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.40.50.9701.8E-11238283IPR029061Thiamin diphosphate-binding fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSDALINGLA GAGGGIIAQL ITYPLHTVNA RQQTDRDRKK EKKKLGTVEQ ICQQLSCKST  60
TLSSLSWXPR PRLTKFNEVN SLRQGPTQLL ILHLWKRIVL SEKPRGVCSE XXGVGGGHEN  120
QKVCAAPVCS NHVVGTIYSS PPLHVTHHEQ RQLQPWRLSQ HSLGTNKKRE VVMSSLHKSL  180
VSTSSYLAXL IKKTHELSVL CDAXIXLVIF SSTGKMFRYC NATNAIHATV AGPTSHLQLI  240
AEPGLNLLGC CNELNAGYAA KGYGRARRIG ENVVAFTVGR LKCAERDRRC VQRELAGHLH  300
NRWDELQRLR HEPNPSPHDR VXRFHSRASV LPNRHLSPX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13644DRKKEKKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.62291e-109bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-10MIKC_MADS family protein