PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000210851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 31952.6 Da PI: 5.9488 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.7e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l ++k +G g W++ +++ g++R++k+c++rw++yl MDP0000210851 14 RGAWTALEDKILSSYIKAHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+v+++++lG++ W++Ia +++ gRt++++k++w++ MDP0000210851 67 RGNISGDEEELIVRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 6777889***************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.984 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.64E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.29E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.449 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-23 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGRSPCCSKE GLNRGAWTAL EDKILSSYIK AHGEGKWRSL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SGDEEELIVR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKSKVDS 120 FSGSSKETSL NPCKSIAKKK DVESKTSTAA AQPLVIRTKA TRLTKILVPQ NIPSDENYTA 180 AAANPLELQT QSAEKGGSTE EFPRTNAGDC SNILKNFGCD DDDIDAKGDQ YCNEFQLLNS 240 IPLDEAXIND GCWTGGNGCD LEDYGASLDL DSLAFLLDSE EWPSQENVVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 12 | 115 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30404 | 0.0 | root |
Function -- GeneRIF ? help Back to Top | ||||||
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ267900 | 0.0 | DQ267900.1 Malus x domestica cultivar Royal Gala MYB9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280749.1 | 0.0 | uncharacterized protein LOC103440900 | ||||
TrEMBL | Q0QMQ8 | 0.0 | Q0QMQ8_MALDO; MYB9 | ||||
STRING | XP_008377820.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 3e-63 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000210851 |
Entrez Gene | 103440900 |
Publications ? help Back to Top | |||
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